Abstract

Human Environmental Disease Network: Deciphering disease-disease and chemicaldisease associations using chemical contaminants information_suppl

Highlights

  • It is well established that genes and environmental factors influence common human diseases, understanding disease-causing defects is still a challenge (Hunter, 2005)

  • Three cases fall under this category: (a) the chemical toxicity is well known and the chemical is recognized to cause the disease, (b) the causal associations have been found in recent, large, prospective or retrospective cohort studies, and (c) the chemicals are listed as group 1 human carcinogens by the International Agency for Research on Cancer (IARC)2

  • Diseases and gene ontology (GO) information were integrated from two different sources in each gene/protein list

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Summary

Introduction

It is well established that genes and environmental factors influence common human diseases, understanding disease-causing defects is still a challenge (Hunter, 2005). Several network based approaches have allowed deciphering disease comorbidity (Goh et al, 2007; Lee et al, 2008; Hidalgo et al, 2009; Suthram et al, 2010; Davis and Chawla, 2011; Sun et al, 2014a; Menche et al, 2015). Roque et al (2011) created an approach to gather phenotypic descriptions of patients from medical records that would suggest new disease-disease associations. All these studies provide comprehensive views of links between diseases, they all rely on existing knowledge, i.e., genes, pathways and phenotypic associations (Hidalgo et al, 2009)

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