Abstract

Reduced mitochondrial DNA copy number, mitochondrial DNA mutations or disruption of electron transfer chain complexes induce mitochondria-to-nucleus retrograde signaling, which induces global change in nuclear gene expression ultimately contributing to various human pathologies including cancer. Recent studies suggest that these mitochondrial changes cause transcriptional reprogramming of nuclear genes although the mechanism of this cross talk remains unclear. Here, we provide evidence that mitochondria-to-nucleus retrograde signaling regulates chromatin acetylation and alters nuclear gene expression through the heterogeneous ribonucleoprotein A2 (hnRNAP2). These processes are reversed when mitochondrial DNA content is restored to near normal cell levels. We show that the mitochondrial stress-induced transcription coactivator hnRNAP2 acetylates Lys 8 of H4 through an intrinsic histone lysine acetyltransferase (KAT) activity with Arg 48 and Arg 50 of hnRNAP2 being essential for acetyl-CoA binding and acetyltransferase activity. H4K8 acetylation at the mitochondrial stress-responsive promoters by hnRNAP2 is essential for transcriptional activation. We found that the previously described mitochondria-to-nucleus retrograde signaling-mediated transformation of C2C12 cells caused an increased expression of genes involved in various oncogenic processes, which is retarded in hnRNAP2 silenced or hnRNAP2 KAT mutant cells. Taken together, these data show that altered gene expression by mitochondria-to-nucleus retrograde signaling involves a novel hnRNAP2-dependent epigenetic mechanism that may have a role in cancer and other pathologies.

Highlights

  • The mitochondrial genome and its function are highly sensitive to environmental toxins, drugs and food additives

  • We show that these promoters were transcriptionally activated in PmtDNAdepl cells and this activation was diminished in cells stably expressing short hairpin RNA (shRNA) against heterogeneous ribonucleoprotein A2 (hnRNPA2) (Figure 1b)

  • Chromatin immunoprecipitation (ChIP) analysis shows that association of hnRNPA2 with the stress-target gene promoters cathepsin L, RyR1 and Akt1 was markedly increased in PmtDNA-depl cells, which was reduced by ~ 80% in reverted cells (Figure 1c; Supplementary Figure S3B)

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Summary

Introduction

The mitochondrial genome and its function are highly sensitive to environmental toxins, drugs and food additives. Reduction in mitochondrial DNA (mtDNA) copy number and associated changes in mitochondrial membrane potential (Δψm) and mitochondrial dysfunction are common in numerous pathophysiological conditions, such as aging, cancer, neurodegenerative diseases and cardiomyopathy [1]. Dysfunctional mitochondria initiate retrograde signaling that is propagated through multiple mechanisms, including the Ca2+/calmodulin activated calcineurin pathway, mitochondrial reactive oxygen species (ROS)-induced hypoxia inducible factor (HIF) pathway, mitochondrial unfolded protein response or an AMPK activation pathway [2,3,4,5,6]. Mitochondrial retrograde signaling (MtRS) has been reported in different pathological conditions, including myoclonic epilepsy with ragged-red fibers (MERRF), diabetes, aging, cancer and deafness [7,8,9,10,11].

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