Abstract

BackgroundIn yeast, DNA damage leads to the mono and polyubiquitination of the sliding clamp PCNA. Monoubiquitination of PCNA is controlled by RAD18 (E3 ligase) and RAD6 (E2 conjugating enzyme), while the extension of the monoubiquitinated PCNA into a polyubiquitinated substrate is governed by RAD5, and the heterodimer of UBC13/MMS2. Each modification directs a different branch of the DNA damage tolerance pathway (DDT). While PCNA monoubiquitination leads to error-prone bypass via TLS, biochemical studies have identified MMS2 along with its heteromeric partner UBC13 to govern the error-free repair of DNA lesions by catalyzing the formation of lysine 63-linked polyubiquitin chains (K63-polyUb). Recently, it was shown that PCNA polyubiquitination is conserved in human cells and that this modification is dependent on RAD18, UBC13 and SHPRH. However, the role of hMMS2 in this process was not specifically addressed.ResultsIn this report we show that mammalian cells in which MMS2 was reduced by siRNA-mediated knockdown maintains PCNA polyubiquitination while a knockdown of RAD18 or UBC13 abrogates PCNA ubiquitination. Moreover, the additional knockdown of a UEV1A (MMS2 homolog) does not deplete PCNA polyubiquitination. Finally, mouse embryonic stem cells null for MMS2 with or without the additional depletion of mUEV1A continue to polyubiquitinated PCNA with normal kinetics.ConclusionOur results point to a high level of redundancy in the DDT pathway and suggest the existence of another hMMS2 variant (hMMSv) or complex that can compensate for its loss.

Highlights

  • In yeast, DNA damage leads to the mono and polyubiquitination of the sliding clamp PCNA

  • Efficient Knockdown of MMS2 and UEV1a In yeast, monoubiquitination requires the ubiquitin E2/ E3 complex RAD6/RAD18 and further polyubiqutination is dependent on the RAD5/UBC13/MMS2 complex

  • In the present study we demonstrate that cells partially or totally devoid of MMS2 and cells experiencing knockdown of both MMS2 and UEV1a do not exhibit a significant reduction in PCNA polyubiquitination after UV irradiation

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Summary

Introduction

DNA damage leads to the mono and polyubiquitination of the sliding clamp PCNA. The failure to remove DNA lesions in a timely and efficient manner often forces a cell to bypass the damage in order to avoid replication stalling. This is accomplished through DNA damage tolerance (DDT), an important component of the DNA damage response. BMC Molecular Biology 2008, 9:24 http://www.biomedcentral.com/1471-2199/9/24 age to continue with DNA synthesis by allowing bypass of such sites in either an error-prone or error-free manner [2].

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