Abstract

One of the most fundamental challenges for all living organisms is to sense and respond to alternating nutritional conditions in order to adapt their metabolism and physiology to promote survival and achieve balanced growth. Here, we applied metabolomics and lipidomics to examine temporal regulation of metabolism during starvation in wild‐type Caenorhabditis elegans and in animals lacking the transcription factor HLH‐30. Our findings show for the first time that starvation alters the abundance of hundreds of metabolites and lipid species in a temporal‐ and HLH‐30‐dependent manner. We demonstrate that premature death of hlh‐30 animals under starvation can be prevented by supplementation of exogenous fatty acids, and that HLH‐30 is required for complete oxidation of long‐chain fatty acids. We further show that RNAi‐mediated knockdown of the gene encoding carnitine palmitoyl transferase I (cpt‐1) only impairs survival of wild‐type animals and not of hlh‐30 animals. Strikingly, we also find that compromised generation of peroxisomes by prx‐5 knockdown renders hlh‐30 animals hypersensitive to starvation, which cannot be rescued by supplementation of exogenous fatty acids. Collectively, our observations show that mitochondrial functions are compromised in hlh‐30 animals and that hlh‐30 animals rewire their metabolism to largely depend on functional peroxisomes during starvation, underlining the importance of metabolic plasticity to maintain survival.

Highlights

  • The ability to regulate metabolism in response to changes in nutrient availability is an evolutionarily conserved mechanism ranging from bacteria to humans

  • This study provides a detailed metabolomic and lipidomic analyses characterizing temporal effects of acute starvation on metabolite levels in both wild-­type C. elegans and in animals lacking functional HLH-­30, an ortholog of the mammalian transcription factor transcription factor EB (TFEB)

  • As recently shown (Harvald et al, 2017), the present study reveals that starvation massively rewires metabolism and lipid regulatory networks in a manner that is strongly dependent on the transcription factor HLH-­30

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Summary

| INTRODUCTION

The ability to regulate metabolism in response to changes in nutrient availability is an evolutionarily conserved mechanism ranging from bacteria to humans. A major regulator of lipid metabolism during starvation is the conserved basic helix-­ loop-­helix transcription factor HLH-­30 in Caenorhabditis elegans (C. elegans), an ortholog of the mammalian transcription factor EB (TFEB; Lapierre et al, 2013). We find that starvation induces both long-­chain acyl-­carnitine and cardiolipin levels in wild-­ type animals, in accordance with enhanced mitochondrial metabolism. Induction of cardiolipin and acyl-­carnitine levels and oxidation of oleic acid upon starvation are completely absent in hlh-­30 animals, arguing that HLH-­30 is required for induction of mitochondrial β-­oxidation during starvation. We find that impaired generation of peroxisomes induces premature death of hlh-­30 animals upon starvation, which cannot be rescued by supplementation of exogenous fatty acids. We show for the first time, that functional loss of HLH-­30 renders C. elegans highly dependent on peroxisomal degradation of fatty acids to survive starvation. Our observations substantiate the importance of metabolic plasticity in order to survive periods of nutrient scarcity

| RESULTS
| DISCUSSION
Findings
| EXPERIMENTAL PROCEDURES
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