Abstract

We studied human immunodeficiency virus, type 1 (HIV-1) integrase (IN) complexes derived from nuclei of human cells stably expressing the viral protein from a synthetic gene. We show that in the nuclear extracts IN exists as part of a large distinct complex with an apparent Stokes radius of 61 A, which dissociates upon dilution yielding a core molecule of 41 A. We isolated the IN complexes from cells expressing FLAG-tagged IN and demonstrated that the 41 A core is a tetramer of IN, whereas 61 A molecules are composed of IN tetramers associated with a cellular protein with an apparent molecular mass of 76 kDa. This novel integrase interacting protein was found to be identical to lens epithelium-derived growth factor (LEDGF/p75), a protein implicated in regulation of gene expression and cellular stress response. HIV-1 IN and LEDGF co-localized in the nuclei of human cells stably expressing IN. Furthermore, recombinant LEDGF robustly enhanced strand transfer activity of HIV-1 IN in vitro. Our findings indicate that the minimal IN molecule in human cells is a homotetramer, suggesting that at least an octamer of IN is required to accomplish coordinated integration of both retroviral long terminal repeats and that LEDGF is a cellular factor involved in this process.

Highlights

  • We studied human immunodeficiency virus, type 1 (HIV-1) integrase (IN) complexes derived from nuclei of human cells stably expressing the viral protein from a synthetic gene

  • Our findings indicate that the minimal IN molecule in human cells is a homotetramer, suggesting that at least an octamer of IN is required to accomplish coordinated integration of both retroviral long terminal repeats and that LEDGF is a cellular factor involved in this process

  • HIV-1 IN Is Present in the Insoluble Nuclear Fraction—The 293T-INsala cell line used in this work was similar to the previously reported 293T-INs [29], except that it expressed HIV-1 IN with the Met-Ala dipeptide at its N terminus

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Summary

Introduction

We studied human immunodeficiency virus, type 1 (HIV-1) integrase (IN) complexes derived from nuclei of human cells stably expressing the viral protein from a synthetic gene. Recombinant HIV IN forms enzymatically active multimers [18, 19], reconstitution of the integration reaction in vitro using recombinant enzyme preparations results in predominantly uncoupled (half-site) integration of LTR DNA substrates. Retroviral DNA integration is preceded by the assembly of a stable and compact preintegration complex (PIC) that contains a DNA copy of the viral genome associated with viral and cellular proteins. Barrier-to-autointegration factor (BAF) has been reported to protect Moloney murine leukemia virus PICs against suicidal self-integration [20]

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