Abstract

The systematic mutation of histone 3 (H3) genes in model organisms has proven to be a valuable tool to distinguish the functional role of histone residues. No system exists in mammalian cells to directly manipulate canonical histone H3 due to a large number of clustered and multi-loci histone genes. Over the years, oncogenic histone mutations in a subset of H3 have been identified in humans, and have advanced our understanding of the function of histone residues in health and disease. The oncogenic mutations are often found in one allele of the histone variant H3.3 genes, but they prompt severe changes in the epigenetic landscape of cells, and contribute to cancer development. Therefore, mutation approaches using H3.3 genes could be relevant to the determination of the functional role of histone residues in mammalian development without the replacement of canonical H3 genes. In this review, we describe the key findings from the H3 mutation studies in model organisms wherein the genetic replacement of canonical H3 is possible. We then turn our attention to H3.3 mutations in human cancers, and discuss H3.3 substitutions in the N-terminus, which were generated in order to explore the specific residue or associated post-translational modification.

Highlights

  • Histones are the building blocks of chromatin, participating primarily in DNA compaction within the nucleus of eukaryotic cells

  • Through the application of histone 3 (H3).3 mutagenesis, we found that unmodified K4 residue itself is crucial for the recognition and binding of nucleosome remodelling deacetylase (NuRD) and switch/sucrose non-fermentable (SWI/SNF) complexes to nucleosomes in the mammalian genome

  • Studies that aim to characterize histone post-translational modifications (PTMs) function using H3.3 mutations should consider that the deposition pattern of H3.3 itself could favor the mis-regulation of specific chromatin pathways over others

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Summary

Introduction

Histones are the building blocks of chromatin, participating primarily in DNA compaction within the nucleus of eukaryotic cells. Four main canonical histones (H2A, H2B, H3, and H4) constitute an octamer, which is surrounded by approximately 146 bp of DNA. This histone octamer-DNA complex composes a nucleosome, the basic unit of chromatin [1,2]. H3K4me and H3K27ac are considered to indicate active enhancers [9,10,11,12] All of these histone modifications are reversible, and in most cases, several enzymes are responsible for their deposition (i.e., writers) and removal (i.e., erasers). Histone PTMs are interpreted by chromatin-associated complexes, and can directly impact the surrounding epigenetic landscape by recruiting or inhibiting specific protein factors. The expansion of our understanding regarding the role of histone variants and uncovering their specialized functions is important for the characterization of chromatin dynamics

Histone H3 Variants
Histone Residue Mutagenesis in Model Organisms
Other Fungi
Histone PTM Studies through the Perturbation of Chromatin Factors
Chemical
K9M and K36M
Conclusions and Future Perspectives
Full Text
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