Abstract

The active conformation of the dimeric cofactor-dependent phosphoglycerate mutase (dPGM) from Escherichia coli has been elucidated by crystallographic methods to a resolution of 1.25 A (R-factor 0.121; R-free 0.168). The active site residue His(10), central in the catalytic mechanism of dPGM, is present as a phosphohistidine with occupancy of 0.28. The structural changes on histidine phosphorylation highlight various features that are significant in the catalytic mechanism. The C-terminal 10-residue tail, which is not observed in previous dPGM structures, is well ordered and interacts with residues implicated in substrate binding; the displacement of a loop adjacent to the active histidine brings previously overlooked residues into positions where they may directly influence catalysis. E. coli dPGM, like the mammalian dPGMs, is a dimer, whereas previous structural work has concentrated on monomeric and tetrameric yeast forms. We can now analyze the sequence differences that cause this variation of quaternary structure.

Highlights

  • Phosphoglycerate mutases (PGMs)1 are enzymes involved in glycolysis and gluconeogenesis

  • The active conformation of the dimeric cofactor-dependent phosphoglycerate mutase from Escherichia coli has been elucidated by crystallographic methods to a resolution of 1.25 Å (R-factor 0.121; R-free 0.168)

  • DPGM is the archetype of the “phosphoglycerate mutaselike” protein fold superfamily (SCOP [11]), which contains the phosphatase domain of the 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase family as well as prostatic acid phosphatase and phytase

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Summary

EXPERIMENTAL PROCEDURES

Expression, and Purification—The E. coli (K12) pgm gene was amplified from genomic DNA by a polymerase chain reaction using the 5Ј and 3Ј end-specific primers 5Ј CCC-GCG-CAT-ATG-GCT-GTAACT-AAG 3Ј and 5Ј CGC-GGA-TCC-TTA-CTT-CGC-TTT-ACC-CTG 3Ј. These oligonucleotides (Amersham Pharmacia Biotech) introduced NdeI and BamHI restriction sites, respectively (underlined).

Resolution limit Unique reflexions Completeness
RESULTS AND DISCUSSION
Partner atom
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