Abstract
BackgroundU6 promoters have been used for single guide RNA (sgRNA) transcription in the clustered regularly interspaced short palindromic repeats/CRISPR-associated protein (CRISPR/Cas9) genome editing system. However, no available U6 promoters have been identified in Aspergillus niger, which is an important industrial platform for organic acid and protein production. Two CRISPR/Cas9 systems established in A. niger have recourse to the RNA polymerase II promoter or in vitro transcription for sgRNA synthesis, but these approaches generally increase cloning efforts and genetic manipulation. The validation of functional RNA polymerase II promoters is therefore an urgent need for A. niger.ResultsHere, we developed a novel CRISPR/Cas9 system in A. niger for sgRNA expression, based on one endogenous U6 promoter and two heterologous U6 promoters. The three tested U6 promoters enabled sgRNA transcription and the disruption of the polyketide synthase albA gene in A. niger. Furthermore, this system enabled highly efficient gene insertion at the targeted genome loci in A. niger using donor DNAs with homologous arms as short as 40-bp.ConclusionsThis study demonstrated that both heterologous and endogenous U6 promoters were functional for sgRNA expression in A. niger. Based on this result, a novel and simple CRISPR/Cas9 toolbox was established in A. niger, that will benefit future gene functional analysis and genome editing.
Highlights
U6 promoters have been used for single guide RNA transcription in the clustered regularly interspaced short palindromic repeats/CRISPR-associated protein (CRISPR/CRISPR associated protein 9 (Cas9)) genome editing system
We aimed to establish a simple CRISPR/ Cas9 system based on the U6 promoter in A. niger
Different U6 promoters efficiently initiated single guide RNA (sgRNA) transcription for genomic albA disruption To establish a simple CRISPR/Cas9 system based on the U6 promoter in A. niger, we tested three U6 promoters from different species for sgRNA expression
Summary
U6 promoters have been used for single guide RNA (sgRNA) transcription in the clustered regularly interspaced short palindromic repeats/CRISPR-associated protein (CRISPR/Cas9) genome editing system. No available U6 promoters have been identified in Aspergillus niger, which is an important industrial platform for organic acid and protein production. Two CRISPR/Cas systems established in A. niger have recourse to the RNA polymerase II promoter or in vitro transcription for sgRNA synthesis, but these approaches generally increase cloning efforts and genetic manipulation. The clustered regularly interspaced short palindromic repeats/CRISPR associated protein (CRISPR/Cas9) system is a powerful and revolutionary genome editing tool [3, 4]. In the CRISPR/Cas system, the endonuclease Cas is guided to a specific locus by a single guide RNA (sgRNA) where it generates a double strand break (DSB) in the genome.
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