Abstract

Background and AimsRecent studies indicate that hepatitis C virus (HCV) can modulate the expression of various genes including those involved in interferon signaling, and up-regulation of interferon-stimulated genes by HCV was reported to be strongly associated with treatment outcome. To expand our understanding of the molecular mechanism underlying treatment resistance, we analyzed the direct effects of interferon and/or HCV infection under immunodeficient conditions using cDNA microarray analysis of human hepatocyte chimeric mice.MethodsHuman serum containing HCV genotype 1b was injected into human hepatocyte chimeric mice. IFN-α was administered 8 weeks after inoculation, and 6 hours later human hepatocytes in the mouse livers were collected for microarray analysis.ResultsHCV infection induced a more than 3-fold change in the expression of 181 genes, especially genes related to Organismal Injury and Abnormalities, such as fibrosis or injury of the liver (P = 5.90E-16 ∼ 3.66E-03). IFN administration induced more than 3-fold up-regulation in the expression of 152 genes. Marked induction was observed in the anti-fibrotic chemokines such as CXCL9, suggesting that IFN treatment might lead not only to HCV eradication but also prevention and repair of liver fibrosis. HCV infection appeared to suppress interferon signaling via significant reduction in interferon-induced gene expression in several genes of the IFN signaling pathway, including Mx1, STAT1, and several members of the CXCL and IFI families (P = 6.0E-12). Genes associated with Antimicrobial Response and Inflammatory Response were also significantly repressed (P = 5.22×10−10 ∼ 1.95×10−2).ConclusionsThese results provide molecular insights into possible mechanisms used by HCV to evade innate immune responses, as well as novel therapeutic targets and a potential new indication for interferon therapy.

Highlights

  • Chronic hepatitis C virus (HCV) infection is one of the most serious global health threats, affecting more than 170 million people worldwide [1,2,3]

  • Change of gene expression with HCV infection To analyze the effect of HCV infection on gene expression in human hepatocytes, we compared the gene expression profiles between Group A and Group C

  • Among the 2,519 genes that remained significant after screening by Welch’s t-test, more than 3.0-fold expression changes between groups were observed in 181 genes. 157 of these 181 genes were up-regulated following HCV infection, and the other 24 were down-regulated

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Summary

Introduction

Chronic hepatitis C virus (HCV) infection is one of the most serious global health threats, affecting more than 170 million people worldwide [1,2,3]. Viral and host factors, such as HCV RNA titer, viral substitutions in HCV core or NS5A region, age, gender, liver fibrosis, and SNPs in IL-28B locus, are significantly associated with the effects of PEG-IFN and RBV combination therapy [7,8,9,10,11,12,13,14,15], but the precise molecular mechanisms remained unclear. Recent studies indicate that hepatitis C virus (HCV) can modulate the expression of various genes including those involved in interferon signaling, and up-regulation of interferon-stimulated genes by HCV was reported to be strongly associated with treatment outcome. To expand our understanding of the molecular mechanism underlying treatment resistance, we analyzed the direct effects of interferon and/or HCV infection under immunodeficient conditions using cDNA microarray analysis of human hepatocyte chimeric mice

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