Abstract
Three-dimensional packing is essential for protein folding. Homology alignment and de nova methods have been used to develop algorithms that would predict protein packing in proteins. Even though hydrophobic cores of proteins are formed through the packing of side chains of hydrophobic residues, the stereological arrangement of individual amino acids and in three dimensional hydrophobic cores is rather difficult to determine. In order to simplify the description of a protein core packing, in this manuscript, we have determined the relationship between angles, distances, and residue usage between two helices. Data from this analysis demonstrate that the contact residues determine the angle and the distance between two helical elements. This approach provides a means to predict the three-dimensional packing of helices in proteins and allows for an understanding of the biological interaction within proteins and among proteins based on surface contact residue parameters.
Talk to us
Join us for a 30 min session where you can share your feedback and ask us any queries you have
Schedule a callMore From: International Journal of Bioinformatics Research and Applications
Disclaimer: All third-party content on this website/platform is and will remain the property of their respective owners and is provided on "as is" basis without any warranties, express or implied. Use of third-party content does not indicate any affiliation, sponsorship with or endorsement by them. Any references to third-party content is to identify the corresponding services and shall be considered fair use under The CopyrightLaw.
