Abstract

Gut microbiota has shown tight and coordinated connection with various functions of its host such as metabolism, immunity, energy utilization, and health maintenance. To gain insight into whether gut microbes affect the metabolism of fish, we employed fast-growing transgenic common carp (Cyprinus carpio L.) to study the connections between its large body feature and gut microbes. Metagenome-based fingerprinting and high-throughput sequencing on bacterial 16S rRNA genes indicated that fish gut was dominated by Proteobacteria, Fusobacteria, Bacteroidetes and Firmicutes, which displayed significant differences between transgenic fish and wild-type controls. Analyses to study the association of gut microbes with the fish metabolism discovered three major phyla having significant relationships with the host metabolic factors. Biochemical and histological analyses indicated transgenic fish had increased carbohydrate but decreased lipid metabolisms. Additionally, transgenic fish has a significantly lower Bacteroidetes:Firmicutes ratio than that of wild-type controls, which is similar to mammals between obese and lean individuals. These findings suggest that gut microbiotas are associated with the growth of fast growing transgenic fish, and the relative abundance of Firmicutes over Bacteroidetes could be one of the factors contributing to its fast growth. Since the large body size of transgenic fish displays a proportional body growth, which is unlike obesity in human, the results together with the findings from others also suggest that the link between obesity and gut microbiota is likely more complex than a simple Bacteroidetes:Firmicutes ratio change.

Highlights

  • Microbes, which colonize animal gut, function collectively as an extra ‘organ’ for the host

  • The results suggest that the relative abundance of Firmicutes over Bacteroidetes could be one of the factors contributing to the fast growth of transgenic fish, Bacteroidetes and Firmicutes account for only a small proportion of its gut microbiota

  • Individual fish reared in ponds with the same commercial feed from larval stage to adult animals were used for the comparison of gut microbiota composition

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Summary

Introduction

Microbes, which colonize animal gut, function collectively as an extra ‘organ’ for the host Their community structure is shaped by the combining effects of host genotype, lifestyle, living environments, and selective pressures from gut habitats [1,2,3,4]. The genomes of these microbes (microbiome) exceed the size of the host nuclear genome by a few orders of magnitude, contributing to a broad range of functions which have not evolved wholly on the host [5,6,7]. The potential mechanisms underlying this relationship include increased nutrient absorption from the diet, prolonged intestinal transit time, altered bile acid entero-hepatic cycle, increased cellular uptake of circulating triglycerides, and altered tissue composition of biologically active polyunsaturated fatty acid [13]

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