GPOSYSH: Genomic Prediction of Oryza Sativa Yield and Subpopulation Using Hybrid Methods.

Abstract

Most of the existing studies focus on genetic methods or Machine learning models, in this, we implemented a hybrid combination of genetic methods and machine learning models that accurately predicted phenotypic trait yield, height and subpopulation. Our proposed methodology for genomic prediction of yield in Oryza sativa (rice) involves a two-level classification approach. First, we classify biological sequences and cluster them using the UPGMA algorithm on a phylogenetic tree. Then, we use advanced machine learning techniques like Random Forest, and K-Nearest Neighbours to predict GEBVs with 85- 95% accuracy on rice subpopulations. we achieved an accuracy of 93% when compared with other stated literature in this paper. This approach overcomes limitations and effectively enhances crop breeding by capturing the genotype-phenotype relationship.