Abstract

Fluorescent protein-based indicators for intracellular environment conditions such as pH and ion concentrations are commonly used to study the status and dynamics of living cells. Despite being an important factor in many biological processes, the development of an indicator for the physicochemical state of water, such as pressure, viscosity and temperature, however, has been neglected. We here found a novel mutation that dramatically enhances the pressure dependency of the yellow fluorescent protein (YFP) by inserting several glycines into it. The crystal structure of the mutant showed that the tyrosine near the chromophore flipped toward the outside of the β-can structure, resulting in the entry of a few water molecules near the chromophore. In response to changes in hydrostatic pressure, a spectrum shift and an intensity change of the fluorescence were observed. By measuring the fluorescence of the YFP mutant, we succeeded in measuring the intracellular pressure change in living cell. This study shows a new strategy of design to engineer fluorescent protein indicators to sense hydrostatic pressure.

Highlights

  • Fluorescent protein, which is perhaps the most popular fluorescent probe in life science due to its simple and easy labeling, is a spontaneous fluorescent protein isolated from Pacific jellyfish (Aequoria victoria) [1,2,3], and other fluorescent proteins exhibiting various emission spectra have been engineered by means of direct mutagenesis, and/or isolation from different coelenterates [4,5]

  • We here used yellow fluorescent protein (YFP), which is a green fluorescent protein (GFP) variant that has a chromophore composed of the GFP chromophore and the phenol group of Tyr203 [5,20]

  • The pressure sensitivity of YFP-3G was improved 5-fold at 300 MPa and over 13-fold at 100 MPa, compared with that of YFP. These results indicate that the hydrostatic pressure dependency of the glycine inserted mutants showed the different manner among YFP, YFP-1G and YFP-3G, and YFP-3G showed the best performance as pressure sensor

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Summary

Introduction

Fluorescent protein, which is perhaps the most popular fluorescent probe in life science due to its simple and easy labeling, is a spontaneous fluorescent protein isolated from Pacific jellyfish (Aequoria victoria) [1,2,3], and other fluorescent proteins exhibiting various emission spectra have been engineered by means of direct mutagenesis, and/or isolation from different coelenterates [4,5]. In conjunction with different molecular biology techniques such as direct mutagenesis, circular permutation and Förster resonance energy transfer, various fluorescent proteins have been developed to study the effects of intracellular properties including pH, Ca2+concentration, and tensile force within a protein, on cellular behavior [6,7,8,9] Despite their importance in numerous cellular processes, fluorescent proteins have not proven usable for measuring the physicochemical state of water, which affects protein functions, i.e., the enzymatic activity and structural stability of a protein strongly depend on the temperature and/or pressure of the solution [10,11,12]. We here aimed to visualize the other state of water, hydrostatic pressure, in living cells using fluorescence reporter

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