Abstract
Enterococci are Gram-positive bacteria that are found in plants, soil and as commensals of the gastrointestinal tract of humans, mammals, and insects. Despite their commensal nature, they have also become globally important nosocomial pathogens. Within the genus Enterococcus, Enterococcus faecium, and Enterococcus faecalis are clinically most relevant. In this review, we will discuss how E. faecium and E. faecalis have evolved to become a globally disseminated nosocomial pathogen. E. faecium has a defined sub-population that is associated with hospitalized patients and is rarely encountered in community settings. These hospital-associated clones are characterized by the acquisition of adaptive genetic elements, including genes involved in metabolism, biofilm formation, and antibiotic resistance. In contrast to E. faecium, clones of E. faecalis isolated from hospitalized patients, including strains causing clinical infections, are not exclusively found in hospitals but are also present in healthy individuals and animals. This observation suggests that the division between commensals and hospital-adapted lineages is less clear for E. faecalis than for E. faecium. In addition, genes that are reported to be associated with virulence of E. faecalis are often not unique to clinical isolates, but are also found in strains that originate from commensal niches. As a reflection of more ancient association of E. faecalis with different hosts, these determinants Thus, they may not represent genuine virulence genes but may act as host-adaptive functions that are useful in a variety of intestinal environments. The scope of the review is to summarize recent trends in the emergence of antibiotic resistance and explore recent developments in the molecular epidemiology, population structure and mechanisms of adaptation of E. faecium and E. faecalis.
Highlights
Enterococci are low-GC Gram-positive ovococci that can form pairs and chains of diverse lengths
The ubiquitous nature of enterococci, the flexibility of their genomes and the widespread use of antibiotics in human and veterinary medicine, are important factors that drive the current emergence of E. faecium and E. faecalis as multi-drug resistant (MDR) nosocomial pathogens
It is tempting to speculate that the deep phylogenetic split in E. faecium is driven by anthropogenic influences since strains from farm animals and clinical isolates, share a common feature as they both originate from environments where mammalian hosts are in close contact with each other and usage of antibiotics is high
Summary
Enterococci are low-GC Gram-positive ovococci that can form pairs and chains of diverse lengths. Enterococci have become ever more prominent as a causative agent of nosocomial infections since the 1970s (Arias and Murray, 2012). Enterococcus faecalis and Enterococcus faecium, cause the vast majority of hospitalacquired enterococcal infections in humans (Agudelo Higuita and Huycke, 2014). Of these two, E. faecium has rapidly acquired resistance to several classes of antibiotics. The intrinsic resistance of enterococci to some antibiotics, including aminoglycosides, and the ability to acquire and disseminate antibiotic resistance determinants, like those involved in vancomycin resistance, only partly explain the recent emergence of these organisms as nosocomial pathogens. This review will focus on E. faecalis and E. faecium as both species have emerged as important nosocomial pathogens over the last 30 years and represent a major hub for the dissemination of antibiotic resistance genes
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