Geographic Location, Management Strategy, and Huanglongbing Disease Affect Arbuscular Mycorrhizal Fungal Communities Across U.S. Citrus Orchards

Abstract

The benefits of arbuscular mycorrhizal fungi (AMF) to agroecosystems have been well recognized. Citrus is a globally grown fruit tree commonly found in association with AMF. Global citrus production is currently under the threat of the pandemic huanglongbing (HLB) disease. Since its introduction in the United States, the disease has devastated the Florida citrus industry and is now at the doorsteps of commercial orchards in California. Here, we tested how the two distinct climatic zones within the continental United States where citrus is mostly grown (California and Florida) influenced AMF community diversity and composition. We also assessed in what capacity low-input organic farming and HLB disease affected the AMF communities colonizing the citrus roots. Root samples were collected from 88 trees across 10 orchards. Orchards were selected based on conventional or organic practices in California and based on HLB symptom severity in Florida. AMF communities were characterized using high-throughput sequencing of the small-subunit ribosomal RNA gene. Taxa names were assigned based on a phylogenetic analysis that comprised a backbone of AMF reference sequences from Mycobank and virtual taxa from the MaarjAM database. AMF were detected in 78% of citrus root samples, with taxa belonging to six genera ( Dominikia, Funneliformis, Glomus, Rhizophagus, Sclerocystis, and Septoglomus) and unknown Glomeraceae genera. Geographical location, management practice, and disease affected AMF community composition. We provide evidence that perennial agroecosystems are composed of generalist and specialist AMF taxa comparable with other ecosystems and identified ubiquitous taxa that could potentially be exploited for agricultural purposes.