Abstract

Cowpea is one of the most important grain legumes in sub-Saharan Africa (SSA). It provides strong support to the livelihood of small-scale farmers through its contributions to their nutritional security, income generation and soil fertility enhancement. Worldwide about 6.5 million metric tons of cowpea are produced annually on about 14.5 million hectares. The low productivity of cowpea is attributable to numerous abiotic and biotic constraints. The abiotic stress factors comprise drought, low soil fertility, and heat while biotic constraints include insects, diseases, parasitic weeds, and nematodes. Cowpea farmers also have limited access to quality seeds of improved varieties for planting. Some progress has been made through conventional breeding at international and national research institutions in the last three decades. Cowpea improvement could also benefit from modern breeding methods based on molecular genetic tools. A number of advances in cowpea genetic linkage maps, and quantitative trait loci associated with some desirable traits such as resistance to Striga, Macrophomina, Fusarium wilt, bacterial blight, root-knot nematodes, aphids, and foliar thrips have been reported. An improved consensus genetic linkage map has been developed and used to identify QTLs of additional traits. In order to take advantage of these developments single nucleotide polymorphism (SNP) genotyping is being streamlined to establish an efficient workflow supported by genotyping support service (GSS)-client interactions. About 1100 SNPs mapped on the cowpea genome were converted by LGC Genomics to KASP assays. Several cowpea breeding programs have been exploiting these resources to implement molecular breeding, especially for MARS and MABC, to accelerate cowpea variety improvement. The combination of conventional breeding and molecular breeding strategies, with workflow managed through the CGIAR breeding management system (BMS), promises an increase in the number of improved varieties available to farmers, thereby boosting cowpea production and productivity in SSA.

Highlights

  • Some progress has been made through conventional breeding at international and national research institutions in the last three decades

  • Cowpea improvement could benefit from modern breeding methods based on molecular genetic tools

  • About 1100 single nucleotide polymorphism (SNP) mapped on the cowpea genome were converted by LGC Genomics to KASP assays

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Summary

Genomic Tools in Cowpea Breeding

Young cowpea leaves are used as spinach in eastern and southern Africa while green immature pods and green mature seeds are used in Senegal and some other African countries. In West Africa, cowpea occupies over 85% of the area under pulses and 10% of the total cultivated land (Fatokun et al, 2012b). If these past trends in cowpea area expansion and yield continue into the future, the global cowpea supply is projected to reach 9.8 million tons in 2020 and 12.3 million tons in 2030, against the projected global demand of nearly 8.5 million tons in 2020 and 11.2 million tons in 2030. Through the sales of cowpea products, smallholder farmers in SSA generate some income despite the fact that information about cowpea trade is very scanty. Abate et al (2012) attributed this lack of information to the limited international trade involving cowpea

PRODUCTION CONSTRAINTS
TARGET TRAITS
Validated SSR marker kit Cowpea consensus genetic linkage map Software
AVAILABLE GENOMIC RESOURCES
Tanzania Nigeria Swaziland
Fusarium wilt
Genome Sequence Efforts in Cowpea
THE USE OF GENOMIC TOOLS IN BREEDING PROGRAMS
SUMMARY
Findings
AUTHOR CONTRIBUTIONS
Full Text
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