Abstract

The world population is expected to be larger and wealthier over the next few decades and will require more animal products, such as milk and beef. Tropical regions have great potential to meet this growing global demand, where pasturelands play a major role in supporting increased animal production. Better forage is required in consonance with improved sustainability as the planted area should not increase and larger areas cultivated with one or a few forage species should be avoided. Although, conventional tropical forage breeding has successfully released well-adapted and high-yielding cultivars over the last few decades, genetic gains from these programs have been low in view of the growing food demand worldwide. To guarantee their future impact on livestock production, breeding programs should leverage genotyping, phenotyping, and envirotyping strategies to increase genetic gains. Genomic selection (GS) and genome-wide association studies play a primary role in this process, with the advantage of increasing genetic gain due to greater selection accuracy, reduced cycle time, and increased number of individuals that can be evaluated. This strategy provides solutions to bottlenecks faced by conventional breeding methods, including long breeding cycles and difficulties to evaluate complex traits. Initial results from implementing GS in tropical forage grasses (TFGs) are promising with notable improvements over phenotypic selection alone. However, the practical impact of GS in TFG breeding programs remains unclear. The development of appropriately sized training populations is essential for the evaluation and validation of selection markers based on estimated breeding values. Large panels of single-nucleotide polymorphism markers in different tropical forage species are required for multiple application targets at a reduced cost. In this context, this review highlights the current challenges, achievements, availability, and development of genomic resources and statistical methods for the implementation of GS in TFGs. Additionally, the prediction accuracies from recent experiments and the potential to harness diversity from genebanks are discussed. Although, GS in TFGs is still incipient, the advances in genomic tools and statistical models will speed up its implementation in the foreseeable future. All TFG breeding programs should be prepared for these changes.

Highlights

  • The tropics are home to about a third of the world’s population, accounting for 36% of the Earth’s landmass, and where most of the global demographic increase takes place (Morales, 2009)

  • We have focused on elephant grass

  • Research priorities have focused on the development of new capabilities such as the availability of genome sequences, high-throughput genotyping, and germplasm characterization of tropical forage grasses; identification of genes associated with important traits; development and use of large-scale phenotyping tools; and implementation of Genomic selection (GS) (Pereira et al, 2018)

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Summary

INTRODUCTION

The tropics are home to about a third of the world’s population, accounting for 36% of the Earth’s landmass, and where most of the global demographic increase takes place (Morales, 2009). In Brazil, these challenges include reducing losses due to biotic stresses (especially spittlebug attacks), increasing adaptation based on expected climate changes, and improving nutritional value to enhance animal performance, resulting in more beef and milk per kilogram of pasture To address these challenges, research priorities have focused on the development of new capabilities such as the availability of genome sequences, high-throughput genotyping, and germplasm characterization of tropical forage grasses; identification of genes associated with important traits; development and use of large-scale phenotyping tools; and implementation of GS (Pereira et al, 2018). The sets of allele-dosed SNPs containing up to 5% of missing data from each of the reference assemblies ranged between 5,032 for one of the M. maximus transcriptomes and 8,112 for S. viridis This was the first report on the development and assessment of prediction models, considering the allele dosage, for GS in M. maximus, increased marker density and prediction accuracies may be expected when a high-quality genome assembly for the species is available for SNP discovery and genotyping. While both efforts resulted in chromosome-scale scaffolds, the fact that the SMARTDENOVO assembler does not generate haplotype-resolved contigs indicates that the high heterozygosity levels of elephant grass were not represented in the assemblies

STATISTICAL METHODS IN GS
Findings
ADDITIONAL METHODS APPLIED TO TFG BREEDING
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