Genome-wide analysis of Eucalyptus grandis WRKY genes family and their expression profiling in response to hormone and abiotic stress treatment

Abstract

The WRKY transcription factors, a large family of proteins in plants, are involved in multiple developmental and biological processes including response to phytohormones and abiotic stress. However, little information is available regarding the WRKY family in Eucalyptus, which has been the most widely planted hardwood trees in tropical and subtropical areas. In this study, a total of 79 WRKY genes (named as EgrWRKY1-79) were identified from the Eucalyptus grandis genome and classified into three main groups according to the phylogenetic analysis, which was further supported by their gene structure and conserved motifs. Of which, 28 EgrWRKYs were involved in tandem duplication but none for segmental duplication, indicating that tandem duplication was the main cause for the expansion of WRKY gene family in E. grandis. Subsequently, expression profiles of EgrWRKY genes in eight different tissues and in response to treatments of three hormones (SA, JA, and BR) and two abiotic stresses (salt and cold) were analyzed. The results revealed that the EgrWRKY genes had differential expression in their transcript abundance and they were differentially expressed in response to plant hormones and salt and cold stresses, suggesting their contributions to plant developmental processes as well as abiotic stresses with the involvement of hormone signaling transduction. Taken together, these findings will increase our understanding of EgrWRKY gene family involved in abiotic stresses and hormone signaling transduction, and also will provide some stress-responsive candidate EgrWRKY genes for further characterization of their functions in Eucalyptus.