Abstract
Novoherbaspirillum sp. strain UKPF54, a plant growth-promoting rhizobacterium with the ability to mitigate nitrous oxide emission from agriculture soils, has been successfully isolated from paddy soil in Kumamoto, Japan. Here, we report the whole-genome sequence of this strain.
Highlights
Novoherbaspirillum sp. strain UKPF54, a plant growth-promoting rhizobacterium with the ability to mitigate nitrous oxide emission from agriculture soils, has been successfully isolated from paddy soil in Kumamoto, Japan
The predicted functional genes consisted of 11 genes of the ABC transporters, 10 genes of the two-component system, and 5 genes of bacterial chemotaxis
The functional genes contained candidate genes associated with nitrogen metabolism and plant growth promotion (Table 1)
Summary
Novoherbaspirillum sp. strain UKPF54, a plant growth-promoting rhizobacterium with the ability to mitigate nitrous oxide emission from agriculture soils, has been successfully isolated from paddy soil in Kumamoto, Japan. Genes were predicted using the NCBI Prokaryotic Genome Annotation Pipeline (PGAP, revision 4.8) with the best-placed reference protein set (GeneMarkS2ϩ) [7, 8]. A total of 4,307 protein-coding sequences, 56 tRNAs, 9 rRNAs, 4 noncoding RNAs (ncRNAs), and 50 pseudogenes were Gene name fdx fdxH fixA fixB nifU
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