Abstract

The molecular events that underpin genome segregation during bacterial cytokinesis have not been fully described. The tripartite segrosome complex that is encoded by the multiresistance plasmid TP228 in Escherichia coli is a tractable model to decipher the steps that mediate accurate genome partitioning in bacteria. In this case, a “Venus flytrap” mechanism mediates plasmid segregation. The ParG sequence-specific DNA binding protein coats the parH centromere. ParF, a ParA-type ATPase protein, assembles in a three-dimensional meshwork that penetrates the nucleoid volume where it recognizes and transports ParG-parH complexes and attached plasmids to the nucleoid poles. Plasmids are deposited at the nucleoid poles following the partial dissolution of the ParF network through a combination of localized ATP hydrolysis within the meshwork and ParG-mediated oligomer disassembly. The current study demonstrates that the conformation of the nucleotide binding pocket in ParF is tuned exquisitely: a single amino acid change that perturbs the molecular arrangement of the bound nucleotide moderates ATP hydrolysis. Moreover, this alteration also affects critical interactions of ParF with the partner protein ParG. As a result, plasmid segregation is inhibited. The data reinforce that the dynamics of nucleotide binding and hydrolysis by ParA-type proteins are key to accurate genome segregation in bacteria.

Highlights

  • Accurate genome segregation is an essential cellular process that guarantees the stable transmission of genetic material during cytokinesis (Bloom and Joglekar, 2010; Hirano, 2015)

  • ParF is a multifunctional ParA-type segregation protein encoded by the TP228 multidrug resistance plasmid

  • The protein binds and hydrolyzes ATP, assembles into higher-order species upon ATP binding, and interacts with the partner protein ParG which modulates the ATPase activity and multimerization properties of ParF (Barillà et al, 2005, 2007; Dobruk-Serkowska et al, 2012). These and other characteristics of ParF and ParG form the basis of the “Venus flytrap” mechanism of plasmid segregation: ParF forms a three-dimensional meshwork that penetrates the nucleoid interior in vivo where it recognizes and transports ParG-parH complexes and the attached plasmids to the nucleoid poles

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Summary

Introduction

Accurate genome segregation is an essential cellular process that guarantees the stable transmission of genetic material during cytokinesis (Bloom and Joglekar, 2010; Hirano, 2015). The most widely-distributed motor proteins that mediate plasmid segregation are those of the ParA superfamily of Walker-type ATP-binding proteins that are encoded widely by bacterial chromosomes. A cycle of ParA assembly and disassembly within the nucleoid may promote the directed movement of plasmid DNA prior to cell division (Barillà et al, 2005; Ringgaard et al, 2009; McLeod et al, 2017) Another model suggests that the nucleoid provides a substructure for plasmid segregation by a diffusion-ratchet mechanism in which a gradient of ParA protein across the surface of the nucleoid promotes plasmid movement (Hatano and Niki, 2010; Vecchiarelli et al, 2010, 2014; Hwang et al, 2013). A DNA-relay mechanism may utilize the elastic dynamics of the chromosome to convey the segregation complex between DNA regions via a ParA gradient (Lim et al, 2014)

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