Genetic relationships of Japanese potato cultivars assessed by RAPD analysis

Abstract

Seventy-three breeding lines and cultivars, which included all Japanese cultivars, were assessed by random amplified polymorphic DNA (RAPD) analysis. Thirty-one of 40 decamer primers revealed 84 scorable RAPDs. Using these RAPDs, 67 of 73 cultivars were distinguished from each other. One of the cultivars released as a protoclonal variant was able to distinguish from the parent by increasing the number of primers surveyed. Based on the number of different RAPDs between each pair of accessions, cluster analysis was performed to exploit genetic diversity in Japanese cultivars. Closely related cultivars deduced from their pedigrees were clustered closely, indicating that similarities based on the presence vs. absence of RAPDs were reflections of genetic similarities. Old Japanese cultivars, as suggested by their similarity of chloroplast DNA toS. tuberosum ssp.andigena, were indeed clustered with ssp.andigena accessions, supporting these were relic cultivars of early European potatoes. The present study suggests that Japanese potatoes are an interesting mass of genetic diversity including North American, European, and Andean germplasms and relic potatoes.