Genetic relationships and gene flow between resident and migratory brook trout in the Salmon Trout River

Abstract

Genetic differentiation among brook trout (Salvelinus fontinalis) of different life history forms and populations can result from reproductive isolation imposed by natural or anthropogenically derived barriers to gene flow, behavioral incompatibilities, or differential exposure to environmental cues. We used multi-locus microsatellite genotypes and likelihood and Bayesian-based analyses to characterize the degree of genetic differentiation and evidence of introgression among stream resident brook trout above a natural barrier, and putative stream residents and adfluvial (coaster) brook trout from below the barrier in the Salmon Trout River (STR); the sole tributary along the southern shore of Lake Superior known to be inhabited by a viable remnant population of coaster brook trout. Two genetically differentiated populations were identified, generally associated with individuals inhabiting sections of the STR above and below the falls. No evidence of differentiation was found between a priori classified resident and coaster brook trout from below the falls. Gene flow from individuals above the falls was detected based on evidence of interbreeding between upper river individuals and coasters below the falls. We collected only a relatively small number of individuals that we a priori classified as being stream residents below the falls, and these individuals had a high probability of having ancestry originating from the population above the barrier, which suggests that the stream-resident life history may be exceptionally rare or absent in the lower Salmon Trout River.