Genetic origin of avian influenza A H7N4 virus causing a case of human infection in China, 2018

Abstract

Objective To analyze the molecular characteristics and genetic origin of a novel avian influenza A H7N4 virus casuing a case of human infection in China. Methods Specimens were collected from the patient and chickens and ducks kept by the patient and neighbours and then detected by real-time quantitative PCR. The original specimens and virus isolates were analyzed by next-generation sequencing technology to obtain viral whole-genome sequences. Pairwise sequence alignments and phylogenetic analysis were performed by BLASTs, ClustalX and MEGA 6.1 softwares. Results In January 2018, a human case infected with avian influenza A H7N4 virus was confirmed. Seven H7N4 viruses were isolated from specimens collected from chicken and ducks kept in the patient`s backyard. H7N4 virus was a novel reassortant virus with all eight gene fragments derived from wild waterfowl in Eurasia. HA protein contained a single basic amino acid residue R in cleavage site, suggesting that H7N4 virus was low pathogenic. The receptor-binding sites of HA had QSG at 226-228 residues, which indicated that the virus retained avian-type receptor specificity (SAα2-3Gal). Different from H7N4 viruses in avian, the virus isolated from the patient had substitution at position 627 (E→K) in PB2 protein, which might increase its adaptation in human host. Conclusion This study reported a case of human infection with a novel reassortant avian influenza A H7N4 virus, which revealed that the traditional backyard breeding models might facilitate cross-species transmission of avian influenza viruses in southern China. Key words: Avian influenza A virus; H7N4 subtype; Cross-species transmission