Genetic Map Construction, QTL Mapping, and Candidate Genes Screening of Grain Size Traits in Common Buckwheat (Fagopyrum esculentum M.)

Abstract

Common buckwheat (Fagopyrum esculentum M.) is an important pseudo-cereal crop and contains an abundance of nutrients and bioactive compounds. However, the yield of buckwheat is low compared to that of other major crops. QTL mapping and candidate gene screening of grain size are very important for increasing production in common buckwheat through molecular breeding in the future. In the present study, an F1 segregating population with 217 individuals was established using a cross between Ukraine daliqiao (UD) and Youqiao 2 (YQ2) that showed a significant difference in grain size. The InDel and SSR primers were developed based on transcriptome sequencing between parents in the previous study. We constructed a genetic linkage map, including 39 SSR loci and 93 InDel loci, with a total length of 1398.33 cM and an average spacing of 10.59 cM. Combined with the grain size phenotype data of the F1 population, a total of 14 QTL were detected, including 6-grain length QTL, 3-grain width QTL, and 5 hundred-grain-weight QTL. QTL of grain width and hundred-grain weight were all detected near SWU_Fe_InDel086 and SWU_Fe_InDel076. Some putative candidate genes with the ex1pression or InDel difference between parents were screened within the QTL interval. This study would lay the foundation for map-based cloning and molecular mechanism of grain size and ultimately improvement of yield in common buckwheat.