Abstract

Foresight in climate change and the challenges ahead requires a systematic approach to sunflower breeding that will encompass all available technologies. There is a great scarcity of desirable genetic variation, which is in fact undiscovered because it has not been sufficiently researched as detection and designing favorable genetic variation largely depends on thorough genome sequencing through broad and deep resequencing. Basic exploration of genomes is insufficient to find insight about important physiological and molecular mechanisms unique to crops. That is why integrating information from genomics, epigenomics, transcriptomics, proteomics, metabolomics and phenomics enables a comprehensive understanding of the molecular mechanisms in the background of architecture of many important quantitative traits. Omics technologies offer novel possibilities for deciphering the complex pathways and molecular profiling through the level of systems biology and can provide important answers that can be utilized for more efficient breeding of sunflower. In this review, we present omics profiling approaches in order to address their possibilities and usefulness as a potential breeding tools in sunflower genetic improvement.

Highlights

  • Crop production today is threatened by severe abiotic stresses due to extreme weather conditions, accompanied by emerging diseases and a decrease in arable land [1,2,3]

  • In order to overcome the difficulties that may arise from the application of a large number of obtained data, it is necessary to define an appropriate scheme for analyzing, interpreting and linking the data

  • The use of highperformance computational analysis offers opportunities to enable a deeper comprehension of the gene regulatory network for a given trait and design a more efficient breeding strategy [120]

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Summary

Introduction

Crop production today is threatened by severe abiotic stresses due to extreme weather conditions (droughts, floods and other disasters), accompanied by emerging diseases and a decrease in arable land [1,2,3]. The main sunflower breeding goals are aimed towards high seed and oil yield, genetic resistance and high level of tolerance to the economically most important diseases, insects and parasitic weed (broomrape), as well as tolerance to abiotic stresses (in the first place to drought). As one of the most important oilseed crops worldwide, in order to meet growing global demands for sunflower products, intensified efforts for implementation of all available advanced breeding tools are required to improve the quantity and the quality of sunflower output by focusing on factors that are limiting phenotype expression of genetic potential. Substantial progress has been made in order to improve breeding process in sunflower by application of DNA markers, especially for disease resistance [9] and tolerance to abiotic stress [10].

Genomics—Pangenomics
Epigenomics
Transcriptomics
Proteomics
Metabolomics
Phenomics
Integrated Omics Approach—Systems Biology
Conclusions and Prospects
Findings
Methods
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