Abstract

Even within a single genus, such as Drosophila, cases of lineage-specific adaptive evolution have been found. Therefore, the molecular basis of phenotypic variation must be addressed in more than one species group, in order to infer general patterns. In this work, we used D. americana, a species distantly-related to D. melanogaster, to perform an F2 association study for developmental time (DT), chill-coma recovery time (CRT), abdominal size (AS) and lifespan (LS) involving the two strains (H5 and W11) whose genomes have been previously sequenced. Significant associations were found between the 43 large indel markers developed here and DT, AS and LS but not with CRT. Significant correlations are also found between DT and LS, and between AS and LS, that might be explained by variation at genes belonging to the insulin and ecdysone signaling pathways. Since, in this F2 association study a single marker, located close to the Ecdysone receptor (EcR) gene, explained as much as 32.6% of the total variation in DT, we performed a second F2 association study, to determine whether large differences in DT are always due to variation in this genome region. No overlapping signal was observed between the two F2 association studies. Overall, these results illustrate that, in D. americana, pleiotropic genes involved in the highly-conserved insulin and ecdysone signaling pathways are likely responsible for variation observed in ecologically relevant phenotypic traits, although other genes are also involved.

Highlights

  • The complete description of the molecular basis of variation for quantitative traits in natural populations of different species is essential to understand how genetic variation for adaptive traits is maintained, in general, and whether the adaptive phenotypic variation observed within and between species is caused by the same variable loci [1]

  • H5=xW11R F2 Association Study In the F2 association study involving strains H5 and W11, significant associations were found between the large indel markers here reported and developmental time (DT), abdominal size (AS) and LS (Figs. 1 and 2; Tables S2–S4)

  • The molecular markers showing significant associations explain as much as 36.97% of the total variation in DT found in this cross (see the C5 marker; Fig. 1 and Table S2; for this marker the difference between the genotypic classes showing extreme values for DT is 4.01 days (14.83 vs 18.84 days))

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Summary

Introduction

The complete description of the molecular basis of variation for quantitative traits in natural populations of different species is essential to understand how genetic variation for adaptive traits is maintained, in general, and whether the adaptive phenotypic variation observed within and between species is caused by the same variable loci [1]. Genes that have been reported as harboring variability that explains within species phenotypic variation in D. melanogaster have been found to be missing in distantly related Drosophila species (see for instance, [14]). Drosophila americana (virilis group) is becoming an important model for comparative studies. This species is distantly related to D. melanogaster since the two lineages have been diverging for about 40 million years [15]. The genome of strains H5 and W11 has been sequenced and assembled (for a detailed discussion see Fonseca et al [16])

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