Abstract
BackgroundFully isogenic lines in fish can be developed using “mitotic” gynogenesis (suppression of first zygotic mitosis following inactivation of the sperm genome). However, genome-wide verification of the steps in this process has seldom been applied. We used ddRADseq to generate SNP markers in a meiotic gynogenetic family of European seabass (Dicentrarchus labrax): (i) to verify the lack of paternal contribution in a meiotic gynogenetic family; (ii) to generate a gene-centromere map from this family; (iii) to identify telomeric markers that could distinguish mitotic gynogenetics from meiotic gynogenetics, which sometimes arise spontaneously in mitotic gynogenetic families.ResultsFrom a single meiotic gynogenetic family consisting of 79 progeny, 42 million sequencing reads (Illumina, trimmed to 148 bases) resolved 6866 unique RAD-tags. The 340 male-informative SNP markers that were identified confirmed the lack of paternal contribution. A gene-centromere map was constructed based on 804 female-informative SNPs in 24 linkage groups (2n = 48) with a total length of 1251.02 cM (initial LG assignment was based on the seabass genome assembly, dicLab v1). Chromosome arm structure could be clearly discerned from the pattern of heterozygosity in each linkage group in 18 out of 24 LGs: the other six showed anomalies that appeared to be related to issues in the genome assembly.ConclusionGenome-wide screening enabled substantive verification of the production of the gynogenetic family used in this study. The large number of telomeric and subtelomeric markers with high heterozygosity values in the meiotic gynogenetic family indicate that such markers could be used to clearly distinguish between meiotic and mitotic gynogenetics.
Highlights
Isogenic lines in fish can be developed using “mitotic” gynogenesis
Results ddRAD sequencing A total of 27,071,716 paired-end raw reads were produced from the combined two sequencing runs for the meiotic gynogenetic D. labrax family with 79 progeny (Additional file 1: Table S1)
In an effort to define telomeric markers to aid in the reliable production of isogenic lines by differentiating between meiotic and mitotic gynogenesis, we constructed a genetic linkage map and a gene-centromere map from a meiotic gynogenetic family of European seabass
Summary
Isogenic lines in fish can be developed using “mitotic” gynogenesis (suppression of first zygotic mitosis following inactivation of the sperm genome). Polyploidy has occurred during evolution of various fish groups [1] while gynogenesis is a natural form of reproduction in some species [2]. European seabass is an important mariculture species, extensively farmed in the Mediterranean basin. A further key resource would be the development of isogenic lines through androgenesis [21] or mitotic gynogenesis [22]. These have not been successfully established yet, despite significant efforts [21,22,23,24]
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