Further Characterization of the Major and Minor RabbitFMO1Promoters and Identification of both Positive and Negative Distal Regulatory Elements

Abstract

Previously, two promoters were identified for the rabbitFMO1gene: a major, upstream promoter (P0) that initiates transcription from exon 0 and a second, minor promoter (P1) located approximately 200 bp downstream and initiating transcription from exon 1. Transcription initiation from the P0promoter results in elimination of the exon 1 leader sequence from the mature transcript. In this report, we further define the major promoter and identify several positive and negative upstream regulatory domains employing deletion analysis and transient expression in HepG2 cells. Of interest, P0and P1were equally active in these assays. A 49-bp fragment spanning position −41 to +8 was found essential for the activity of P0and also capable of basal transcriptional activity. Interestingly, this same 49-bp region was found necessary for P1activity. Upstream of P0, three positive regulatory regions (positions −348 to −176, −757 to −584, and −1196 to −829) and two negative regulatory regions (positions −2120 to −1724 and −829 to −757) were identified using deletion mutants. Both P0and P1share the most proximate, positive regulatory domain but were regulated differentially by more distal 5′ sequences. In addition to the upstream regulatory sequences, a potent negatively acting element was observed within intron 1. Using DNA fragments representing the most potent positive (position −348 to −176) and negative (position −829 to −757) regulatory sequences as probes, we demonstrate the formation of multiple specific DNA/protein complexes with protein factor(s) present in HepG2 nuclear extract.