Abstract

The pentatricopeptide repeat (PPR) proteins constitute one of the largest nuclear-encoded protein families in higher plants, with over 400 members in most sequenced plant species. The molecular functions of these proteins and their physiological roles during plant growth and development have been widely studied. Generally, there is mounting evidence that PPR proteins are involved in the post-transcriptional regulation of chloroplast and/or mitochondrial genes, including RNA maturation, editing, intron splicing, transcripts’ stabilization, and translation initiation. The cooperative action of RNA metabolism has profound effects on the biogenesis and functioning of both chloroplasts and mitochondria and, consequently, on the photosynthesis, respiration, and development of plants and their environmental responses. In this review, we summarize the latest research on PPR proteins, specifically how they might function in the chloroplast, by documenting their mechanism of molecular function, their corresponding RNA targets, and their specific effects upon chloroplast biogenesis and host organisms.

Highlights

  • The family of pentatricopeptide repeat (PPR) proteins is well known because of its abundant members and essential functions in angiosperm species, having been discovered just 20 years ago in a genome sequencing analysis of Arabidopsis thaliana (Small and Peeters, 2000)

  • Barkan et al (2012) inferred a code for nucleotide recognition involving two amino acids in each repeat and validated their model by designing and recoding a PPR protein to bind novel RNA sequences in vitro. These results proved that a PPR protein is capable of binding to an RNA sequence in a parallel orientation via a coderecognition mechanism, with nucleotide specificity depending on the amino acid identities at positions of 6 and 19 in each PPR repeat

  • RNA editing is a post-transcriptional process that can be fulfilled by deaminating the specific cytidines to uridines, and most of the discovered trans-factors involved in this process belong to the PLS subfamily (Shikanai, 2015)

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Summary

Introduction

The family of pentatricopeptide repeat (PPR) proteins is well known because of its abundant members and essential functions in angiosperm species, having been discovered just 20 years ago in a genome sequencing analysis of Arabidopsis thaliana (Small and Peeters, 2000). The P subfamily of PPR proteins is generally believed to take part in RNA stabilization and translational activation and promote the splicing of group II introns (Barkan and Small, 2014). The function of P-class PPR proteins aims at stabilizing specific RNAs in chloroplast.

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