Abstract

We recently proposed a detailed model describing the dynamics of the network of cyclin-dependent kinases (Cdks) driving the mammalian cell cycle (Gérard and Goldbeter, 2009). The model contains four modules, each centered around one cyclin/Cdk complex. Cyclin D/Cdk4–6 and cyclin E/Cdk2 promote progression in G1 and elicit the G1/S transition, respectively; cyclin A/Cdk2 ensures progression in S and the transition S/G2, while the activity of cyclin B/Cdk1 brings about the G2/M transition. This model shows that in the presence of sufficient amounts of growth factor the Cdk network is capable of temporal self-organization in the form of sustained oscillations, which correspond to the ordered, sequential activation of the various cyclin/Cdk complexes that control the successive phases of the cell cycle. The results suggest that the switch from cellular quiescence to cell proliferation corresponds to the transition from a stable steady state to sustained oscillations in the Cdk network. The transition depends on a finely tuned balance between factors that promote or hinder progression in the cell cycle. We show that the transition from quiescence to proliferation can occur in multiple ways that alter this balance. By resorting to bifurcation diagrams, we analyze the mechanism of oscillations in the Cdk network. Finally, we show that the complexity of the detailed model can be greatly reduced, without losing its key dynamical properties, by considering a skeleton model for the Cdk network. Using such a skeleton model for the mammalian cell cycle we show that positive feedback (PF) loops enhance the amplitude and the robustness of Cdk oscillations with respect to molecular noise. We compare the relative merits of the detailed and skeleton versions of the model for the Cdk network driving the mammalian cell cycle.

Highlights

  • Research Topic: From structural to molecular systems biology: experimental and computational approaches to unravel mechanisms of kinase activity regulation in cancer and neurodegeneration

  • A DETAILED MODEL FOR THE MAMMALIAN CELL CYCLE Oscillatory dynamics of the cyclin-dependent kinases (Cdks) network The analysis of the detailed model for the Cdk network driving the mammalian cell cycle indicates that when growth factors (GF) exceed a critical value, repetitive activation of the cyclin/Cdk

  • The model predicts that high levels of Wee1 could produce endoreplication cycles, in which large-amplitude oscillations of Cdk2 are not accompanied by large-amplitude variations in Cdk1, while a further increase in the level of Wee1 generates an arrest of the cell cycle

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Summary

Claude Gérard and Albert Goldbeter*

Faculté des Sciences, Université Libre de Bruxelles (ULB), Campus Plaine, Brussels, Belgium. Instead of focusing on a single transition between different phases of the cell cycle, we recently proposed a model for the dynamics of the global Cdk network driving the mammalian cell cycle (Gérard and Goldbeter, 2009). This model consists of four Cdk modules, each centered around one cyclin/Cdk complex. Involving multiple negative and PF loops exerted at the levels of cyclins or Cdks, the detailed model for the cell cycle accounts for the temporal self-organization of the Cdk network in the form of sustained oscillations of the various cyclin/Cdk complexes, corresponding to the progression along the successive phases of the cell cycle (Gérard and Goldbeter, 2009).

Cdk oscillations drive the mammalian cell cycle
RESULTS
Coupling the cell cycle to the circadian clock
DISCUSSION
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