Abstract

Reprogramming of primary virus-infected cells is the critical step that turns viral attacks harmful to humans by initiating super-spreading at cell, organism and population levels. To develop early anti-viral therapies and proactive administration, it is important to understand the very first steps of this process. Plant somatic embryogenesis (SE) is the earliest and most studied model for de novo programming upon severe stress that, in contrast to virus attacks, promotes individual cell and organism survival. We argued that transcript level profiles of target genes established from in vitro SE induction as reference compared to virus-induced profiles can identify differential virus traits that link to harmful reprogramming. To validate this hypothesis, we selected a standard set of genes named ‘ReprogVirus’. This approach was recently applied and published. It resulted in identifying ‘CoV-MAC-TED’, a complex trait that is promising to support combating SARS-CoV-2-induced cell reprogramming in primary infected nose and mouth cells. In this perspective, we aim to explain the rationale of our scientific approach. We are highlighting relevant background knowledge on SE, emphasize the role of alternative oxidase in plant reprogramming and resilience as a learning tool for designing human virus-defense strategies and, present the list of selected genes. As an outlook, we announce wider data collection in a ‘ReprogVirus Platform’ to support anti-viral strategy design through common efforts.

Highlights

  • Effective immunologic protection contributes to resilient behavior of higher organisms

  • alternative oxidase (AOX) overexpression reduced peroxynitrite and tyrosine nitration suggesting that AOX-mediated nitric oxide (NO) removal can prevent downstream toxic products, (b) AOX is critical for mitochondrial Reactive oxygen species (ROS) signal transduction towards mitochondrianucleus retrograde communication [108,109,110], (c) AOX contributes to prevent excessive plant cell death by regulating ROS levels [17, 111, 112], and, (d) pyruvate is a major metabolic regulator of AOX [104, 113,114,115,116,117], which links to the role of sugar and the central branch point between respiration and fermentation [118]

  • Transcriptome profiles were explored by using the data available in public domain from transcriptomic experimental studies in Genbank (NCBI)

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Summary

BACKGROUND

Effective immunologic protection contributes to resilient behavior of higher organisms. AOX overexpression reduced peroxynitrite and tyrosine nitration suggesting that AOX-mediated NO removal can prevent downstream toxic products, (b) AOX is critical for mitochondrial ROS signal transduction towards mitochondrianucleus retrograde communication [108,109,110], (c) AOX contributes to prevent excessive plant cell death by regulating ROS levels [17, 111, 112], and, (d) pyruvate is a major metabolic regulator of AOX [104, 113,114,115,116,117], which links to the role of sugar and the central branch point between respiration and fermentation [118]. Transcriptome profiles were explored by using the data available in public domain from transcriptomic experimental studies in Genbank (NCBI) It proved to be helpful in identifying a complex SARS-CoV-2-induced trait named ‘CoVMAC-TED’ (Preprint 28), which covers early ROS/RNS balancing, aerobic fermentation regulation and cell cycle control. Regulatory data of ‘ReprogVirus’ at TABLE 1 | List of genes selected as ‘ReprogVirus’ for analyses in Homo sapiens

Structural cell organization Glycolysis
Other key genes
AUTHOR CONTRIBUTIONS
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