Abstract

Urbanization is transforming and fragmenting natural environments worldwide, driving changes in biological communities through alterations in local environmental conditions as well as by changing the capacity of species to reach specific habitats. While the majority of earlier studies have been performed on higher plants and animals, it is crucial to increase our insight on microbial responses to urbanization across different spatial scales. Here, using a metacommunity approach, we evaluated the effects of urbanization on bacterioplankton communities in 50 shallow ponds in Belgium (Flanders region), one of the most urbanized areas in Northwest Europe. We estimated the relative importance of local environmental factors (35 abiotic and biotic variables), regional spatial factors and urbanization (built-up area) quantified at two spatial scales (200 m × 200 m and 3 km × 3 km). We show that urbanization at local or regional scales did not lead to strong changes in community composition and taxon diversity of bacterioplankton. Urbanization at regional scale (3 km × 3 km) explained only 2% of community composition variation while at local scale (200 m × 200 m), no effect was detected. Local environmental factors explained 13% (OTUs with relative abundance ≥ 0.1%) to 24% (12 dominant OTUs -≥ 1%) of community variation. Six local environmental variables significantly explained variation in bacterioplankton community composition: pH, alkalinity, conductivity, total phosphorus, abundance of Daphnia and concentration of copper (Cu), of which pH was partly mediated by urbanization. Our results indicate that environmental rather than spatial factors accounted for the variation in bacterioplankton community structure, suggesting that species sorting is the main process explaining bacterioplankton community assembly. Apparently, urbanization does not have a direct and strong effect on bacterioplankton metacommunity structure, probably due to the capacity of these organisms to adapt toward and colonize habitats with different environmental conditions and due to their fast adaptation and metabolic versatility. Thus, bacterioplankton communities inhabiting shallow ponds may be less affected by environmental conditions resulting from urbanization as compared to the impacts previously described for other taxa.

Highlights

  • The extent of anthropogenic transformation of biotic and abiotic conditions on Earth is so profound that we have entered a new geological epoch, aptly dubbed the Anthropocene (Lewis and Maslin, 2015; Waters et al, 2016)

  • To estimate whether more subtle changes could be detected at more specific levels, we tested the effect of urbanization on relative abundances of the most dominant operational taxonomic unit (OTU), and separately on phylum and class levels

  • We evaluated how and to what extent bacterioplankton communities of shallow ponds are affected by urbanization in a metacommunity context

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Summary

Introduction

The extent of anthropogenic transformation of biotic and abiotic conditions on Earth is so profound that we have entered a new geological epoch, aptly dubbed the Anthropocene (Lewis and Maslin, 2015; Waters et al, 2016). Urbanization can affect species richness, evenness and composition by means of several direct and indirect mechanisms. Habitat loss and fragmentation caused by urbanization might lead to reduced species richness and evenness thereby causing biotic homogenization (McKinney, 2006). An increase in impervious surface may result in reduced species richness and changes in species composition through physical and chemical changes due to alterations of the hydrologic regime and polluted run-off (Morse et al, 2003; Chadwick et al, 2006). In addition to changes in species composition, a recent meta-analysis has shown that urbanization increases the rates of phenotypic change across different taxa (Alberti et al, 2017)

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