Abstract

BackgroundEpigenetic alterations and loss of heterozygosity are mechanisms of tumor suppressor gene inactivation. A new carcinogenic pathway, targeting the RAS effectors has recently been documented. RASSF1A, on 3p21.3, and NORE1A, on 1q32.1, are among the most important, representative RAS effectors.MethodsWe screened the 3p21 locus for the loss of heterozygosity and the hypermethylation status of RASSF1A, NORE1A and BLU (the latter located at 3p21.3) in 41 neuroblastic tumors. The statistical relationship of these data was correlated with CASP8 hypermethylation. The expression levels of these genes, in cell lines, were analyzed by RT-PCR.ResultsLoss of heterozygosity and microsatellite instability at 3p21 were detected in 14% of the analyzed tumors. Methylation was different for tumors and cell lines (tumors: 83% in RASSF1A, 3% in NORE1A, 8% in BLU and 60% in CASP8; cell lines: 100% in RASSF1A, 50% in NORE1A, 66% in BLU and 92% in CASP8). In cell lines, a correlation with lack of expression was evident for RASSF1A, but less clear for NORE1A, BLU and CASP8. We could only demonstrate a statistically significant association between hypermethylation of RASSF1A and hypermethylation of CASP8, while no association with MYCN amplification, 1p deletion, and/or aggressive histological pattern of the tumor was demonstrated.Conclusion1) LOH at 3p21 appears in a small percentage of neuroblastomas, indicating that a candidate tumor suppressor gene of neuroblastic tumors is not located in this region.2) Promoter hypermethylation of RASSF1A and CASP8 occurs at a high frequency in neuroblastomas.

Highlights

  • Epigenetic alterations and loss of heterozygosity are mechanisms of tumor suppressor gene inactivation

  • 1) Loss of heterozygosity (LOH) at 3p21 appears in a small percentage of neuroblastomas, indicating that a candidate tumor suppressor gene of neuroblastic tumors is not located in this region

  • 2) Promoter hypermethylation of RASSF1A and CASP8 occurs at a high frequency in neuroblastomas

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Summary

Introduction

Epigenetic alterations and loss of heterozygosity are mechanisms of tumor suppressor gene inactivation. A new carcinogenic pathway, targeting the RAS effectors has recently been documented. The genetic alterations most frequently found in neuroblastoma are MYCN amplification and 1p36 allelic loss, both of them associated with a poor prognosis. Allelic losses on the short arm of chromosome 3 have been found in many sporadic human cancers, including lung, kidney, breast, ovarian and neural crest-derived tumors[3]. Loss of heterozygosity (LOH) studies have identified several distinct 3p loci which are likely to contain the tumor suppressor genes: 3p12, 3p14, 3p21.3 and 3p25-26. Overlapping homozygous deletions in lung and breast tumor cell lines have identified the minimal deleted region to 120 kb in 3p21.3 [3,4,5,6]. Eight genes were located within this region including the alpha-2 delta-2 calcium channel subunit, PL6, 101F6, NPRL2/G21, BLU, RASSF1, FUS1 and LUCA2[5]

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