Fluctuations of mRNA distributions in multiple pathway activated transcription

Abstract

<p style='text-indent:20px;'>Randomness in gene transcription can result in fluctuations (noise) of messenger RNA (mRNA) levels, leading to phenotypic plasticity in the isogenic populations of cells. Recent experimental studies indicate that multiple pathway activation mechanism plays an important role in the regulation of transcription noise and cell-to-cell variability. Previous theoretical studies on transcription noise have been emphasized on exact solutions and analysis for models with a single pathway or two cross-talking pathways. For stochastic models with more than two pathways, however, exact analytical results for fluctuations of mRNA levels have not been obtained yet. We develop a gene transcription model to examine the impact of multiple pathways on transcription noise for which the exact fluctuations of mRNA distributions are obtained. It is nontrivial to determine the analytical results for transcription fluctuations due to the high dimension of system parameter space. At the heart of our method lies the usage of the model's intrinsic symmetry to simplify the complicated calculations. We show the symmetric relation among system parameters, which allows us to derive the analytical expressions of the dynamical and steady-state fluctuations and to characterize the nature of transcription noise. Our results not only can be reduced to previous ones in limiting cases but also indicate some differences between the three or more pathway model and the single or two pathway one. Our analytical approaches provide new insights into the role of multiple pathways in noise regulation and optimization. A further study for stochastic gene transcription involving multiple pathways may shed light on the relation between transcription fluctuation and genetic network architecture.