Abstract

BackgroundThe monophyly of flatfishes has not been supported in many molecular phylogenetic studies. The monophyly of Pleuronectoidei, which comprises all but one family of flatfishes, is broadly supported. However, the Psettodoidei, comprising the single family Psettodidae, is often found to be most closely related to other carangimorphs based on substantial sequencing efforts and diversely analytical methods. In this study, we examined why this particular result is often obtained.ResultsThe mitogenomes of five flatfishes were determined. Select mitogenomes of representative carangimorph species were further employed for phylogenetic and molecular clock analyses. Our phylogenetic results do not fully support Psettodes as a sister group to pleuronectoids or other carangimorphs. And results also supported the evidence of long-branch attraction between Psettodes and the adjacent clades. Two chronograms, derived from Bayesian relaxed-clock methods, suggest that over a short period in the early Paleocene, a series of important evolutionary events occurred in carangimorphs.ConclusionBased on insights provided by the molecular clock, we propose the following evolutionary explanation for the difficulty in determining the phylogenetic position of Psettodes: The initial diversification of Psettodes was very close in time to the initial diversification of carangimorphs, and the primary diversification time of pleuronectoids, the other suborder of flatfishes, occurred later than that of some percomorph taxa. Additionally, the clade of Psettodes is long and naked branch, which supports the uncertainty of its phylogenetic placement. Finally, we confirmed the monophyly of flatfishes, which was accepted by most ichthyologists.

Highlights

  • The monophyly of flatfishes has not been supported in many molecular phylogenetic studies

  • Phylogenetic analysis based on mitochondrial genomes Eight phylogenetic topologies were obtained: Concatenated dataset of the first (1N2N)-Bayesian inference (BI), Concatenated dataset of the first (1N2NRT)-BI, Concatenated dataset of the first (1N2N3RY)-BI, 1N2N3RYRT-BI, 1N2N-maximum likelihood (ML), 1N2NRT-ML, 1N2N3RY-ML (Additional file 2: Figure S1 a-g) and 1N2N3RYRT-ML (Fig. 1)

  • The close relationship between these cara-group taxa and Citharidae was not supported by high Posterior probability (PP) or Bootstrap support (BP) in the topologies, which is consistent with the results of previous studies [18, 19, 26]

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Summary

Introduction

The monophyly of flatfishes has not been supported in many molecular phylogenetic studies. The monophyly of Pleuronectoidei, which comprises all but one family of flatfishes, is broadly supported. Flatfishes (order Pleuronectiformes) are divided into two suborders: Psettodoidei, with one family, one genus (Psettodes); and Pleuronectoidei (hereafter pleuronectoids), with 13 families, approximately 128 genera. The eyes of these adult fishes are uniquely located on one side of the body. The study of flatfish fossils has been ongoing. Chanet [3] summarized studies regarding the fossils of this order. Friedman [5] placed the Eocene crown-group flatfish †Joleaudichthys in Psettodoidei and two other Eocene crown-group fossils, †Numidopleura and †Eobothus, within Pleuronectoidei. Friedman [5] placed the Eocene crown-group flatfish †Joleaudichthys in Psettodoidei and two other Eocene crown-group fossils, †Numidopleura and †Eobothus, within Pleuronectoidei. [1]

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