FISH-CS—a rapid method for counting and sorting species of marine zooplankton

Abstract

MEPS Marine Ecology Progress Series Contact the journal Facebook Twitter RSS Mailing List Subscribe to our mailing list via Mailchimp HomeLatest VolumeAbout the JournalEditorsTheme Sections MEPS 410:1-11 (2010) - DOI: https://doi.org/10.3354/meps08654 FEATURE ARTICLE FISH-CS—a rapid method for counting and sorting species of marine zooplankton Christine M. Henzler1,2,*, Elizabeth A. Hoaglund1,2, Steven D. Gaines1,2,3 1Marine Science Institute, and 2Department of Ecology, Evolution and Marine Biology, University of California Santa Barbara, Santa Barbara, California 93106, USA 3Present address: Bren School of Environmental Resource Management, University of California Santa Barbara, Santa Barbara, California 93106, USA *Email: henzler@msi.ucsb.edu ABSTRACT: Understanding population dynamics in marine species has long been hindered by the inherent difficulties of studying species in which all or part of the life cycle is planktonic. Plankton sample processing is laborious and, due to morphological similarity between disparate taxa, often identifies zooplankton only to higher taxonomic levels. As a consequence, many scientific issues that require identification to species level are impossible to explore adequately. Several in situ hybridization protocols show promise for identifying marine larvae by color-coding them with taxon-specific, dye-labeled DNA probes. We adapted these protocols and coupled them with recent cell sorting technology to rapidly and accurately identify bivalve larvae from diverse plankton samples. We developed probes for 2 bivalve taxa: Musculista senhousia and the species complex Mytilus edulis/galloprovincialis/trossulus. Coupled fluorescence in situ hybridization and cell sorting (FISH-CS) separated M. galloprovincialis larvae from both oyster Crassostrea gigas larvae and from a mixed plankton/M. galloprovincialis sample. The number of false positives and false negatives was assessed by a PCR assay. Our FISH-CS method is robust to plankton autofluorescence and can be easily adapted to work with nearly any planktonic species or life stage of appropriate size. KEY WORDS:Fluorescence in situ hybridization · Oligonucleotide probe · 18S rRNA · Marine larvae · Species identification Full text in pdf format Information about this Feature Article NextCite this article as: Henzler CM, Hoaglund EA, Gaines SD (2010) FISH-CS—a rapid method for counting and sorting species of marine zooplankton. Mar Ecol Prog Ser 410:1-11. https://doi.org/10.3354/meps08654 Export citation RSS - Facebook - Tweet - linkedIn Cited by Published in MEPS Vol. 410. Online publication date: July 14, 2010 Print ISSN: 0171-8630; Online ISSN: 1616-1599 Copyright © 2010 Inter-Research.