Abstract

BackgroundSignificant amounts of health data are stored as free-text within clinical reports, letters, discharge summaries and notes. Busy clinicians have limited time to read such large amounts of free-text and are at risk of information overload and consequently missing information vital to patient care. Automatically identifying relevant information at the point of care has the potential to reduce these risks but represents a considerable research challenge. One software solution that has been proposed in industry is the IBM Watson analytics suite which includes rule-based analytics capable of processing large document collections at scale.ResultsIn this paper we present an overview of IBM Watson Content Analytics and a feasibility study using Content Analytics with a large-scale corpus of clinical free-text reports within a UK National Health Service (NHS) context. We created dictionaries and rules for identifying positive incidence of hydronephrosis and brain metastasis from 5.6 m radiology reports and were able to achieve 94% precision, 95% recall and 89% precision, 94% recall respectively on a sample of manually annotated reports. With minor changes for US English we applied the same rule set to an open access corpus of 0.5 m radiology reports from a US hospital and achieved 93% precision, 94% recall and 84% precision, 88% recall respectively.ConclusionsWe were able to implement IBM Watson within a UK NHS context and demonstrate effective results that could provide clinicians with an automatic safety net which highlights clinically important information within free-text documents. Our results suggest that currently available technologies such as IBM Watson Content Analytics already have the potential to address information overload and improve clinical safety and that solutions developed in one hospital and country may be transportable to different hospitals and countries. Our study was limited to exploring technical aspects of the feasibility of one industry solution and we recognise that healthcare text analytics research is a fast-moving field. That said, we believe our study suggests that text analytics is sufficiently advanced to be implemented within industry solutions that can improve clinical safety.

Highlights

  • Significant amounts of health data are stored as free-text within clinical reports, letters, discharge summaries and notes

  • Contributions Our contributions are as follows: (i) we present an implementation of a large-scale commercial text analytics system which uses National Health Service (NHS) data, (ii) we present an overview of IBM Watson Content Analytics and the results of a case study in the radiology domain, and (iii) we show that a task-specific model generalises across radiology reports in two different countries (US and UK) for the two conditions we chose

  • Results we present the results of our investigation using IBM Watson Content Analytics for processing the free-text clinical reports in our case study

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Summary

Introduction

Significant amounts of health data are stored as free-text within clinical reports, letters, discharge summaries and notes. Busy clinicians have limited time to read such large amounts of free-text and are at risk of information overload and missing information vital to patient care. For busy clinicians with limited time the requirement to read large amounts of free-text presents a risk of information overload and missing information vital to the care of their patients. In the past such documents were often handwritten and stored on paper but in parallel with advances in electronic health records (EHR) many of these free text documents are generated digitally and stored within, or linked to, the EHR [1]

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