Abstract
Establishment of the early-life gut microbiota has a large influence on host development and succession of microbial composition in later life stages. The effect of commensal yeasts - which are known to create a conducive environment for beneficial bacteria - on the structure and diversity of fish gut microbiota still remains unexplored. The present study examined the intestinal bacterial community of zebrafish (Danio rerio) larvae exposed to two fish-derived yeasts by sequencing the V4 hypervariable region of bacterial 16S rRNA. The first stage of the experiment (until 7 days post-fertilization) was performed in cell culture flasks under sterile and conventional conditions for germ-free (GF) and conventionally raised (CR) larvae, respectively. The second phase was carried out under standard rearing conditions, for both groups. Exposure of GF and CR zebrafish larvae to one of the yeast species Debaryomyces or Pseudozyma affected the bacterial composition. Exposure to Debaryomyces resulted in a significantly higher abundance of core bacteria. The difference was mainly due to shifts in relative abundance of taxa belonging to the phylum Proteobacteria. In Debaryomyces-exposed CR larvae, the significantly enriched taxa included beneficial bacteria such as Pediococcus and Lactococcus (Firmicutes). Furthermore, most diversity indices of bacterial communities in yeast-exposed CR zebrafish were significantly altered compared to the control group. Such alterations were not evident in GF zebrafish. The water bacterial community was distinct from the intestinal microbiota of zebrafish larvae. Our findings indicate that early exposure to commensal yeast could cause differential bacterial assemblage, including the establishment of potentially beneficial bacteria.
Highlights
Microbial colonization of the gastrointestinal tract plays a key role in immunological and metabolic development of the host, which influences their health and disease status later in life (Rodríguez et al, 2015; Tanaka and Nakayama, 2017)
We explored the potential of two yeast species Debaryomyces sp. and Pseudozyma sp., which were originally isolated from Atlantic salmon (Salmo salar) and zebrafish (Danio rerio), respectively
We investigated the effect of early yeast exposure on the intestinal microbiota composition of zebrafish larvae raised in germ-free (GF) or conventional conditions by sequencing the V4 hypervariable region of the bacterial 16S rRNA gene
Summary
Microbial colonization of the gastrointestinal tract plays a key role in immunological and metabolic development of the host, which influences their health and disease status later in life (Rodríguez et al, 2015; Tanaka and Nakayama, 2017). The initial microbial colonizers are essential for the development of neonatal gut epithelial barrier functions, maturation, and modulation of innate and adaptive immune responses (Hooper and Gordon, 2001). They may provide favorable conditions for subsequent colonization of microbial members (Houghteling and Walker, 2015) and create the platform for establishment of persistent microbial communities (Faith et al, 2013; Houghteling and Walker, 2015). The microbial composition in adults may reflect the history of early-life events, such as initial encounter with microbes, colonization and establishment of microbes in the gastrointestinal tract (Rodríguez et al, 2015)
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