Exploration of rhizosphere-dwelling nematophagous Trichoderma spp. using novel ‘bait technique’ with root-knot nematode Meloidogyne incognita

Abstract

Throughout the world Trichoderma spp. are majorly used as biocontrol agents for managing the economically important plant-parasitic nematodes. We employed a novel strategy to investigate the variety of rhizosphere dwelling Trichoderma species using the nematode Meloidogyne incognita as prey bait. Nine nematophagous Trichoderma spp., validated morphologically and molecularly, were discovered during the expedition in several agroclimatic zones of India. Molecular phylogenetic analysis of these species along with the reported Trichoderma spp. from ‘Harzianum clade’ from India indicated the true identity of Indian T. harzianum sensu stricto to be disputed. Nematophagous nature of the isolated species was confirmed through the presence of extracellular lytic enzymes, secondary metabolites, volatile organic compounds, Huperzine A, and tri-gene cluster variability. Besides, the most promising T. yunnanense isolate, shortlisted based on its in vitro potential against M. incognita, showed the highest levels of nematode parasitism, egg hatching inhibition and juvenile mortality compared to all other isolates and species. Expression of green fluorescent protein in T. yunnanense helped tracking its infection in the juveniles and further validated the nematode parasitizing capacity. The chosen isolate decreased the multiplication factor of M. incognita in pot culture assays and in organically produced capsicum in nematode-infected sick soil. It is interesting that the isolate also markedly increased the plant growth and yield, which was a bonus. Therefore, the performance of T. yunnanense demonstrated through various strategies instills high confidence to propose it as a prospective species for developing as commercially potent nematode biocontrol agent.