Abstract
Species distribution models (SDMs) are widely used in ecology, biogeography and conservation biology to estimate relationships between environmental variables and species occurrence data and make predictions of how their distributions vary in space and time. During the past two decades, the field has increasingly made use of machine learning approaches for constructing and validating SDMs. Model accuracy has steadily increased as a result, but the interpretability of the fitted models, for example the relative importance of predictor variables or their causal effects on focal species, has not always kept pace. Here we draw attention to an emerging subdiscipline of artificial intelligence, explainable AI (xAI), as a toolbox for better interpreting SDMs. xAI aims at deciphering the behavior of complex statistical or machine learning models (e.g. neural networks, random forests, boosted regression trees), and can produce more transparent and understandable SDM predictions. We describe the rationale behind xAI and provide a list of tools that can be used to help ecological modelers better understand complex model behavior at different scales. As an example, we perform a reproducible SDM analysis in R on the African elephant and showcase some xAI tools such as local interpretable model‐agnostic explanation (LIME) to help interpret local‐scale behavior of the model. We conclude with what we see as the benefits and caveats of these techniques and advocate for their use to improve the interpretability of machine learning SDMs.
Highlights
Species distribution models (SDMs) are widely used in ecology, biogeography and conservation biology to estimate relationships between environmental variables and species occurrence data and make predictions of how their distributions vary in space and time
We draw attention to an emerging subdiscipline of artificial intelligence, explainable AI, as a toolbox for better interpreting SDMs. xAI aims at deciphering the behavior of complex statistical or machine learning models, and can produce more transparent and understandable SDM predictions
We acknowledge that some of these methods are already routinely used, and substantial efforts have already been made to improve the interpretation of fitted machine learning models in SDM research and ecology, independently of the emergence of xAI: e.g. bootstrap approach for key variable detection (Olden and Jackson 2002), novel higherorder interaction discovery (Ryo et al 2018), and Maxent’s ‘Explain’ tool and multiple variable importance metrics (Phillips 2017)
Summary
Species distribution models (SDMs) are widely used in ecology, biogeography and conservation biology to estimate relationships between environmental variables and species occurrence data and make predictions of how their distributions vary in space and time. During the past two decades, the field has increasingly made use of machine learning approaches for constructing and validating SDMs. Model accuracy has steadily increased as a result, but the interpretability of the fitted models, for example the relative importance of predictor variables or their causal effects on focal species, has not always kept pace.
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