Expedited large-volume 3-D SEM workflows for comparative microanatomical imaging.

Abstract

To-date, different electron microscopy (EM) approaches are available (e.g., TEM, SEM, STEM, CLEM, etc.) to collect three-dimensional (3-D) information in tissues and cells from the microscale up to the nanometer scale. However, an abundant amount of possibilities and methodologies exist to reconstruct volumes of biological matter. In this topical paper we outline two specimen manipulation workflows for the generation of 3-D scanning electron microscopy (3-D SEM) data by means of serial-block face/focussed ion beam SEM and array tomography (AT). We applied these commonly used workflows to rodent and zebrafish liver as model experimental systems. In doing so, we outline the specific steps of each procedure and discuss in-depth the strengths vs. limitations for each of the respective 3-D SEM specimen manipulation workflows.