Abstract

Here, we report a multi OMIC (transcriptome, proteome, and metabolome) approach to investigate molecular changes in lens fiber cells (FC) of mice exposed to cigarette smoke (CS). Pregnant mice were placed in a whole-body smoke chamber and a few days later pups were born, which were exposed to CS for 5 hours/day, 5 days/week for a total of 3½ months. We examined the mice exposed to CS for CS-related cataractogenesis after completion of the CS exposure but no cataracts were observed. Lenses of CS-exposed and age-matched, untreated control mice were extracted and lens FC were subjected to multi OMIC profiling. We identified 348 genes, 130 proteins, and 14 metabolites exhibiting significant (p < 0.05) differential levels in lens FC of mice exposed to CS, corresponding to 3.6%, 4.3%, and 5.0% of the total genes, protein, and metabolites, respectively identified in this study. Our multi OMIC approach confirmed that only a small fraction of the transcriptome, the proteome, and the metabolome was perturbed in the lens FC of mice exposed to CS, which suggests that exposure of CS had a minimal effect on the mouse lens. It is worth noting that while our results confirm that CS exposure does not have a substantial impact on the molecular landscape of the mouse lens FC, we cannot rule out that CS exposure for longer durations and/or in combination with other morbidities or environmental factors would have a more robust effect and/or result in cataractogenesis.

Highlights

  • We report a multi OMIC approach to investigate molecular changes in lens fiber cells (FC) of mice exposed to cigarette smoke (CS)

  • We identified 348 genes, 130 proteins and 14 metabolites exhibiting significant (p < 0.05) differential levels including diminished levels of the branched-chain amino acid (BCAA)related metabolites in lens fibers cells (FC) of mice exposed to CS

  • We evaluate changes at a molecular level in lens FC of mice exposed to CS through a multi OMIC approach (Fig. 1)

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Summary

Introduction

We report a multi OMIC (transcriptome, proteome, and metabolome) approach to investigate molecular changes in lens fiber cells (FC) of mice exposed to cigarette smoke (CS). As 25 mg of lens FC mass is required for the metabolome analysis, each biological replicate from either CS-exposed or untreated Ct mice consisted of lens FC from both eyes of four mice. The analysis identified 348 differentially expressed (DE) genes (p < 0.05), including 186 down- and 162 up-regulated genes in lens FC of mice exposed to CS (Supplementary Data 1).

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