Abstract

The Asian interior arid zone is the largest desert landform system in the Northern Hemisphere, and has high biodiversity. Little is currently known about the evolutionary history of its biota. In this study, we used Zygophyllum, an important and characteristic component of the Asian interior arid zone, to provide new insights into the evolution of this biota. By greatly enlarged taxon sampling, we present the phylogenetic analysis of Asian Zygophyllum based on two plastid and one nuclear markers. Our phylogenetic analyses indicate that Asian Zygophyllum and Sarcozygium form a clade and Sarcozygium is further embedded within the shrub subclade. An integration of phylogenetic, biogeographic, and molecular dating methods indicates that Zygophyllum successfully colonized the Asian interior from Africa in the early Oligocene, and Asian Zygophyllum became differentiated in the early Miocene and underwent a burst of diversification in the late Miocene associated with the expansion of Asian interior arid lands due to orogenetic and climatic changes. Combining diversification patterns of other important components of the Asian interior arid zone, we propose a multi-stage evolution model for this biota: the late Eocene–early Oligocene origin, the early Miocene expansion, and the middle-late Miocene rapid expansion to the whole Asian interior arid zone. This study also demonstrates that, for Zygophyllum and perhaps other arid-adapted organisms, arid biomes are evolutionary cradles of diversity.

Highlights

  • Over the surface of the Earth, biodiversity is not evenly distributed, but is clustered into several biomes

  • The tree generated by the maximum likelihood (ML) analysis was highly consistent with those retrieved from the Bayesian inference (BI) analysis (Fig 2), except for some weakly supported nodes (BS < 70%)

  • Phylogenetic analyses of the combined three-marker DNA dataset support the division of Zygophylloideae into six clades (Augea, Fagonia, Melocarpum, Roepera, Tetraena, and Zygophyllum), and that the Inner Mongolian Tetraena is embedded within the Tetraena clade

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Summary

Introduction

Over the surface of the Earth, biodiversity is not evenly distributed, but is clustered into several biomes. Understanding the origin and evolution of biomes is a fundamental issue in biology and ecology [1]. Biomes harbor many species, each of which has an individual evolutionary history. As reconstructing the evolutionary histories of all species in a biome is not PLOS ONE | DOI:10.1371/journal.pone.0138697. University), and the Ministry of Education (ZS12014), Shanxi Scholarship Council of China [2010]14-62 As reconstructing the evolutionary histories of all species in a biome is not PLOS ONE | DOI:10.1371/journal.pone.0138697 September 22, 2015

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