Abstract

BackgroundIn vertebrates, the molecular basis of the sense of smell is encoded by members of a large gene family, namely olfactory receptor (OR) genes. Both the total number of OR genes and the proportion of intact OR genes in a genome may indicate the importance of the sense of smell for an animal. There is behavioral, physiological, and anatomical evidence that some bird species, in particular nocturnal birds, have a well developed sense of smell. Therefore, we hypothesized that nocturnal birds with good olfactory abilities have evolved (i) more OR genes and (ii) more intact OR genes than closely related and presumably less 'olfaction-dependent' day-active avian taxa.ResultsWe used both non-radioactive Southern hybridization and PCR with degenerate primers to investigate whether two nocturnal bird species that are known to rely on olfactory cues, the brown kiwi (Apteryx australis) and the kakapo (Strigops habroptilus), have evolved a larger OR gene repertoire than their day-active, closest living relatives (for kiwi the emu Dromaius novaehollandiae, rhea Rhea americana, and ostrich Struthio camelus and for kakapo the kaka Nestor meridionalis and kea Nestor notabilis). We show that the nocturnal birds did not have a significantly higher proportion of intact OR genes. However, the estimated total number of OR genes was larger in the two nocturnal birds than in their relatives.ConclusionOur results suggest that ecological niche adaptations such as daily activity patterns may have shaped avian OR gene repertoires.

Highlights

  • In vertebrates, the molecular basis of the sense of smell is encoded by members of a large gene family, namely olfactory receptor (OR) genes

  • We estimated the jungle fowl OR gene repertoire to consist of 638 genes [19], which was close to the previous estimate of 550 [7]. This suggested that our method provides a sufficiently reliable estimate of OR gene repertoire sizes in species for which full genomic sequences are not yet available

  • The mean number of distinct OR sequences was similar in both clades

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Summary

Introduction

The molecular basis of the sense of smell is encoded by members of a large gene family, namely olfactory receptor (OR) genes. Both the total number of OR genes and the proportion of intact OR genes in a genome may indicate the importance of the sense of smell for an animal. OR gene coding regions are short (~1 kb) and intronless [1,2] Both the total number and the number of intact (i.e. putatively functional) OR genes vary greatly amongst the genomes of vertebrate taxa [3]. It has been suggested that the numbers, and proportions, of intact OR (page number not for citation purposes)

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