Abstract

Semiconductor quantum dots (Qdots) have been utilised as probes in fluorescence microscopy and provide an alternative to fluorescent dyes and fluorescent proteins due to their brightness, photostability, and the possibility to excite different Qdots with a single wavelength. In spite of these attractive properties, their implemenation by biologists has been somewhat limited and only a few Qdot conjugates are commercially available for the labelling of cellular targets. Although many protocols have been reported for the specific labelling of proteins with Qdots, the majority of these relied on Qdot-conjugated antibodies synthesised specifically by the authors (and therefore not widely available), which limits the scope of applications and complicates replication. Here, the specificity of a commercially available, Qdot-conjugated secondary antibody (Qdot-Ab) was tested against several primary IgG antibodies. The antigens were labelled simultaneously with a fluorescent dye coupled to a secondary antibody (Dye-Ab) and the Qdot-Ab. Although, the Dye-Ab labelled all of the intended target proteins, the Qdot-Ab was found bound to only some of the protein targets in the cytosol and could not reach the nucleus, even after extensive cell permeabilisation.

Highlights

  • Quantum dots (Qdots) are nanometre-sized semiconductor nanocrystals that typically consist of a metallic core of cadmium selenium (CdSe) and an inorganic zinc sulfide (ZnS) shell and have been applied as fluorescent probes for the labelling of biological structures [1,2]

  • A Qdot 625Ab concentration of 20 nM was used, as it has been shown that a high concentration of Qdot-conjugated secondary antibody (Qdot-Ab) improves specific labelling and signal-to-noise ratio [21]

  • To assess the labelling efficiency of Qdot-Abs, the extracellular matrix (ECM) protein fibronectin was dual labelled with Qdot 625-Ab and dye coupled to a secondary antibody (Dye-Ab) (Alexa Fluor 488)

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Summary

Introduction

Quantum dots (Qdots) are nanometre-sized semiconductor nanocrystals that typically consist of a metallic core of cadmium selenium (CdSe) and an inorganic zinc sulfide (ZnS) shell and have been applied as fluorescent probes for the labelling of biological structures [1,2]. To make Qdots water soluble, and suitable for biological applications, their surface is modified either by coating with hydrophilic ligands (such as poly(ethylene glycol) (PEG) [3,4]) or they are encapsulated in amphiphilic polymers [5]. Antibodies that recognise specific biological targets can be conjugated to these Qdots for use in immunofluorescence. Cells, followed by permeabilisation with a detergent. This creates pores in the cell membrane, allowing primary and secondary antibodies to gain access to the protein of interest

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