Evaluation of plastid and nuclear DNA markers in barcoding of Aloe saudiarabica, KSA.

Abstract

There is great plant diversity in Saudi Arabia. The Asphodelaceae family is within this great diversity, especially the rare species such as the plant, Aloe saudiarabica. Such plants must be preserved in their natural ranges, hence, the need to document them. Genetic markers have become the approved and widely used method for documenting rare plants. The current study deals with the use of three genetic markers to document A. saudiarabica for the first time. The used genetic markers were Maturase-K (matK), Ribulose-bisphosphate-carboxylase (rbcL), and Internal-transcribed-spacer (ITS). The study found that the primers used for the rbcL gene were not effective in achieving identification. Sequencing of the matK and ITS were achieved successfully. The sequences were determined for both markers using two pairs of primers and deposited in the NCBI databases (GenBank). These markers were effective in identifying A. saudiarabica and determining its evolutionary relationship with other Aloe species in various databases. The study showed that A. vera is high similar (>99%) to the other species. In conclusion, the study showed the likelihood of the different genetic markers to document A. saudiarabica, especially the currently investigated matK and ITS.