Evaluation of Left Ventricle Myocardium Detection by a Fully Automatic Segmentation Using Geodesic Active Contour

Abstract

Cardiac MRI has experienced a crescent relevance in clinical investigations. The segmentation of myocardial walls is a prerequisite for assessment of cardiac viability. Manual or semi-automatic segmentation of all the images of a subject is tedious, as well as consuming much time from cardiologists. In this study, we selected 23 slices of simulated cardiac MR by MRXCAT and 30 real slices of CINE-MR from 15 patients with Chagas Disease. The proposed pipeline of the fully automatic segmentation consists of three steps: 1. Preprocessing; 2. Automatic Seeds Definition; and 3. Segmentation by Geodesic Active Contour. An experienced cardiologist provided the gold standard annotations of apical, mid-ventricular and basal LV myocardium. We use the following three metrics to validate the proposed pipeline with different signal to noise ratio: Dice similarity (DS), Precision (Pr) and Volumetric Similarity (VS). DS show good agreement between manual segmentation and the automatic segmentation in simulated images with SNR 200, 25, 15 and 5, i.e., 0.98, 0.93, 0.9 and 0.72, respectively. We found moderate agreements between manual segmentation and Snake segmentation in simulated images with SNR 200, 25, 15 and 5, i.e., 0.38, 0.42, 0.34 and 0.39, respectively. The DS, VS, and Pr obtained suggest substantial agreements between the manual and our proposed method segmentation in images of Chagas’s Disease, i.e., 0.8 [0.69–0.87], 0.89 [0.72–0.99] and 0.9 [0.76–0.98] (mean [min–max]), respectively. Our findings suggest that one can use the proposed method in the automatic myocardium segmentation with reliability similar to manual tracing, although completely free of human interaction.