Abstract

Single domain antibodies are the small recombinant variable domains derived from camelid heavy-chain-only antibodies. They are renowned for their stability, in large part due to their ability to refold following thermal or chemical denaturation. In addition to refolding after heat denaturation, A3, a high affinity anti-Staphylococcal Enterotoxin B single domain antibody, possesses a melting temperature of ∼84°C, among the highest reported for a single domain antibody. In this work we utilized the recently described crystal structure of A3 to select locations for the insertion of a second disulfide bond and evaluated the impact that the addition of this second bond had on the melting temperature. Four double-disulfide versions of A3 were constructed and each was found to improve the melting temperature relative to the native structure without reducing affinity. Placement of the disulfide bond at a previously published position between framework regions 2 and 3 yielded the largest improvement (>6°C), suggesting this location is optimal, and seemingly provides a universal route to raise the melting temperature of single domain antibodies. This study further demonstrates that even single domain antibodies with extremely high melting points can be further stabilized by addition of disulfide bonds.

Highlights

  • Two of the principal measurable parameters relating to protein stability are the melting temperature and the ability to refold into the native state upon cooling

  • Incorporation of cystines at the site A50-A108 links the bstrand b5 and the approximately 20-residue variable loop region of CDR3. This SS bond placement was selected to tether the CDR3 during high-temperature excursions, and from the simulations, the region was found to be hypermobile with large collective amplitude movements

  • In this paper we demonstrated that the addition of a second disulfide bond to a thermally-stable Single domain antibodies (sdAbs) successfully increased the melting temperature in each of four cases

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Summary

Introduction

Two of the principal measurable parameters relating to protein stability are the melting temperature and the ability to refold into the native state upon cooling. Evaluating Disulfide Bond Position in a Stable Single Domain Antibody of camelids and sharks can be characterized in these terms [1,2,3,4]. Almost all wild type sdAbs contain one disulfide bond that joins frameworks 1 and 3. This bond spans the interior of the protein and links together two banks of bonded beta-sheets. The removal of this disulfide bond by site-directed mutagenesis results in a significant decrease in melting point and can prevent refolding [8, 15, 16]

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