Evaluation of β‐ and γ‐Cyclodextrins as Promising Bisoprolol Drug Carriers: Docking, Molecular Dynamics and MM‐PBSA1 Free‐Energy Calculations*

Abstract

AbstractIn this research work, the binding mechanism of Bisoprolol (BIS) drug into the beta‐cyclodextrin (β‐CD) and gamma‐cyclodextrin (γ‐CD) nanopores were investigated using docking, molecular dynamics (MD) simulations, and MM‐PBSA free energy calculations. Also, we assessed the energetic aspects within the BIS‐CDs complex under different thermal conditions in four stages from 298 to 334 K, which includes mammalian body temperature in order to approximate physiological conditions. The computational results reveal that the encapsulation of the BIS into the cavities of CDs is reinforced by hydrogen bonds (HBs) and van der Waals (vdW) interactions in the aqueous phase. The stability of the inclusion complexes of β and γ‐CD with BIS was confirmed by evaluating system stability, flexibility, dynamic and thermodynamic properties at all temperature steps. Next, we analyzed the degree of complexation between BIS and CDs at four different temperatures. The findings revealed that the degree of complexation is decreased as the temperature is increased. The translational movement of the drug to the outside of the CDs cavity increased in the temperature range of 310 to 334 K in γ‐CD more than β‐CD. The β‐CD complex exhibits greater stability compared to the γ‐CD complex in the aqueous medium. The MM‐PBSA free energy approach also confirms more binding affinity of BIS drug into the β‐CD cavity. keywords: Bisoprolol, β‐cyclodextrin, γ‐cyclodextrin, Molecular dynamics, MM‐PBSA free energy.