Abstract
BackgroundEukaryotic Initiation Factor 4E-Binding Protein (EIF4EBP1, 4EBP1) is overexpressed in many human cancers including breast cancer, yet the role of 4EBP1 in breast cancer remains understudied. Despite the known role of 4EBP1 as a negative regulator of cap-dependent protein translation, 4EBP1 is predicted to be an essential driving oncogene in many cancer cell lines in vitro, and can act as a driver of cancer cell proliferation. EIF4EBP1 is located within the 8p11-p12 genomic locus, which is frequently amplified in breast cancer and is known to predict poor prognosis and resistance to endocrine therapy.MethodsHere we evaluated the effect of 4EBP1 targeting using shRNA knock-down of expression of 4EBP1, as well as response to the mTORC targeted drug everolimus in cell lines representing different breast cancer subtypes, including breast cancer cells with the 8p11-p12 amplicon, to better define a context and mechanism for oncogenic 4EBP1.ResultsUsing a genome-scale shRNA screen on the SUM panel of breast cancer cell lines, we found 4EBP1 to be a strong hit in the 8p11 amplified SUM-44 cells, which have amplification and overexpression of 4EBP1. We then found that knock-down of 4EBP1 resulted in dramatic reductions in cell proliferation in 8p11 amplified breast cancer cells as well as in other luminal breast cancer cell lines, but had little or no effect on the proliferation of immortalized but non-tumorigenic human mammary epithelial cells. Kaplan-Meier analysis of EIF4EBP1 expression in breast cancer patients demonstrated that overexpression of this gene was associated with reduced relapse free patient survival across all breast tumor subtypes.ConclusionsThese results are consistent with an oncogenic role of 4EBP1 in luminal breast cancer and suggests a role for this protein in cell proliferation distinct from its more well-known role as a regulator of cap-dependent translation.
Highlights
Eukaryotic Initiation Factor 4E-Binding Protein (EIF4EBP1, 4EBP1) is overexpressed in many human cancers including breast cancer, yet the role of 4EBP1 in breast cancer remains understudied
The frequency of EIF4EBP1 amplification across all breast cancer subtypes is approximately 13% according to data from The Cancer Genome Atlas (TCGA) and 14% according to data from the Molecular Taxonomy of Breast Cancer International Consortium (METABRIC) [91] (Fig. 1a & b)
We found that expression analysis of the TCGA provisional data shows that high expression of the genes in the A2 region of the 8p11-p12 amplicon, which includes EIF4EBP1, BRF2, Fig. 1 EIF4EBP1 is amplified in human breast cancer and correlates with reduced overall survival. (a) Amplification data from The Cancer Genome Atlas (TCGA) and (b) the Molecular Taxonomy of Breast Cancer International Consortium (METABRIC). (c) Expression analysis using TCGA provisional data shows that high expression of A2 genes: BRF2, RAB11FIP1, EIF4EBP1, ASH2L, LSM1, BAG4, DDHD2, PLPP5, NSD3, FGFR1, TACC1, ADAM9, and ADAM32 correlates with reduced overall survival
Summary
Eukaryotic Initiation Factor 4E-Binding Protein (EIF4EBP1, 4EBP1) is overexpressed in many human cancers including breast cancer, yet the role of 4EBP1 in breast cancer remains understudied. EIF4EBP1 is located within the 8p11-p12 genomic locus, which is frequently amplified in breast cancer and is known to predict poor prognosis and resistance to endocrine therapy. The Eukaryotic Initiation Factor 4E-Binding Protein (EIF4EBP1) sequence is located on Rutkovsky et al BMC Cancer (2019) 19:491 the short arm of chromosome 8: 38,030,502–38,060,365 (GRCh38.p7; current assembly) and is amplified along with other A1 and A2 region genes.
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